Pairwise Alignments

Query, 241 a.a., 23S rRNA pseudouridine synthase E from Vibrio cholerae E7946 ATCC 55056

Subject, 211 a.a., pseudouridine synthase from Pseudomonas fluorescens FW300-N2C3

 Score =  248 bits (633), Expect = 7e-71
 Identities = 117/200 (58%), Positives = 147/200 (73%), Gaps = 2/200 (1%)

Query: 42  ANKKKNATQTALSPKRPLS--PAERKVILFNKPYDTLSQFTDGDGRKTLADYIPIKDVYA 99
           A+++  A   A +P+R     PAE K+ILFNKP+D L+QF+DG+GR TL D+I +  +Y 
Sbjct: 8   ASRRPGAKLPAAAPRRVAKAPPAEPKLILFNKPFDVLTQFSDGEGRATLKDFIDVPGIYP 67

Query: 100 AGRLDRDSEGLLILTNDGILQARLTQPQSKAPKTYWVQVEGSPQESDLEALRHGVTLKDG 159
           AGRLDRDSEGLL+LTNDG LQAR+  P+ K  KTYWVQVEG P    L+ LR GV L DG
Sbjct: 68  AGRLDRDSEGLLLLTNDGQLQARIADPKHKLAKTYWVQVEGEPNAEQLQRLRDGVELNDG 127

Query: 160 PTLPAKVDIMPEPTLWPRNPPVRFRAAIPTTWLAITLMEGRNRQVRRMTAHIGFPTLRLI 219
            TLPA+   + EP LWPRNPPVRFR ++PT+WL + + EGRNRQVRRMTA +G PTLRL+
Sbjct: 128 MTLPAEARQLDEPQLWPRNPPVRFRKSVPTSWLELVIREGRNRQVRRMTAAVGLPTLRLV 187

Query: 220 RYSMGDWNLGDLQPGEWREV 239
           R  +GDW +  L  G+W+EV
Sbjct: 188 RVRIGDWTIEGLDQGQWKEV 207