Pairwise Alignments

Query, 241 a.a., 23S rRNA pseudouridine synthase E from Vibrio cholerae E7946 ATCC 55056

Subject, 230 a.a., 16S rRNA pseudouridine(516) synthase from Pseudomonas fluorescens FW300-N2C3

 Score = 82.0 bits (201), Expect = 9e-21
 Identities = 58/182 (31%), Positives = 94/182 (51%), Gaps = 25/182 (13%)

Query: 65  KVILFNKPYDTLSQFTDGDGRKTLADYI--PIKD-VYAAGRLDRDSEGLLILTNDGILQA 121
           +  + +KP   +S   D     T+ D++  P KD ++ AGRLD ++ GL+++TNDG    
Sbjct: 61  RYFMLHKPPGCVSATRDPQ-HPTVLDWLDEPDKDDLHIAGRLDFNTTGLMLITNDGSWSR 119

Query: 122 RLTQPQSKAPKTYWVQVEGSPQESDLEALRHGV--TLKDGPTLPAKVDIMPEPTLWPRNP 179
           RLTQPQ+K PK Y+V+ E +      +    G+    +D  T PA++ ++ E +      
Sbjct: 120 RLTQPQTKLPKVYYVETEQTITAEYADTFARGLYFAFEDLTTQPAELTLLGEKS------ 173

Query: 180 PVRFRAAIPTTWLAITLMEGRNRQVRRMTAHIGFPTLRLIRYSMGDWNL-GDLQPGEWRE 238
                         ++++EGR  QV+RM  H     LRL R  MG   L G L+PG++R 
Sbjct: 174 ------------ARLSIVEGRYHQVKRMFGHFDNKVLRLHRERMGPLTLDGHLEPGQYRA 221

Query: 239 VT 240
           ++
Sbjct: 222 LS 223