Pairwise Alignments

Query, 241 a.a., 23S rRNA pseudouridine synthase E from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., pseudouridine synthase from Pseudomonas stutzeri RCH2

 Score = 86.7 bits (213), Expect = 6e-22
 Identities = 62/181 (34%), Positives = 86/181 (47%), Gaps = 17/181 (9%)

Query: 64  RKVILFNKPYDTLSQFTDGDGRKTLADYIPIKDV---YAAGRLDRDSEGLLILTNDGILQ 120
           R+V+++NKP   +    D +GR T+ D +P          GRLD ++ GLL+ T DG L 
Sbjct: 77  RRVLIYNKPDGEICTRNDPEGRPTVFDRLPRPKEGRWINIGRLDINTTGLLLFTTDGELA 136

Query: 121 ARLTQPQSKAPKTYWVQVEGSPQESDLEALRHGVTLKDGPTLPAKVDIMPEPTLWPRNPP 180
            RL  P  +  + Y V+V G   +  +E L+ GV L+DGP      DI   P     N  
Sbjct: 137 NRLMHPSYEMDREYAVRVRGEVDDEMIERLKTGVMLEDGPA--RFTDIQEAPGGEGFN-- 192

Query: 181 VRFRAAIPTTWLAITLMEGRNRQVRRMTAHIGFPTLRLIRYSMGD-WNLGDLQPGEWREV 239
                     W    +MEGRNR+VRR+    G    RL R   G  +   DL  G WRE+
Sbjct: 193 ---------HWYHCVVMEGRNREVRRLWESQGLVVSRLKRVRFGPVFMTSDLPMGRWREM 243

Query: 240 T 240
           +
Sbjct: 244 S 244