Pairwise Alignments

Query, 241 a.a., 23S rRNA pseudouridine synthase E from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., ribosomal large subunit pseudouridine synthase B from Pseudomonas syringae pv. syringae B728a

 Score = 85.1 bits (209), Expect = 2e-21
 Identities = 64/181 (35%), Positives = 86/181 (47%), Gaps = 17/181 (9%)

Query: 64  RKVILFNKPYDTLSQFTDGDGRKTLADYIPIKDV---YAAGRLDRDSEGLLILTNDGILQ 120
           R+VI++NKP   +    D +GR T+ D +P          GRLD ++ GLL+ T DG L 
Sbjct: 79  RRVIMYNKPDGEICTRDDPEGRPTVFDRLPRPKEGRWINIGRLDINTTGLLMFTTDGELA 138

Query: 121 ARLTQPQSKAPKTYWVQVEGSPQESDLEALRHGVTLKDGPTLPAKVDIMPEPTLWPRNPP 180
            RL  P  +  + Y V+V G   +  L  L++GV L+DGP      DI   P     N  
Sbjct: 139 NRLMHPSFEMDREYAVRVRGEVDDDMLLRLKNGVILEDGPA--RFTDIQQAPGGEGFN-- 194

Query: 181 VRFRAAIPTTWLAITLMEGRNRQVRRMTAHIGFPTLRLIRYSMGDWNL-GDLQPGEWREV 239
                     W    +MEGRNR+VRR+    G    RL R   G   L  DL  G WRE+
Sbjct: 195 ---------HWYHCVVMEGRNREVRRLWESQGLVVSRLKRVRYGPVFLNSDLPMGRWREM 245

Query: 240 T 240
           +
Sbjct: 246 S 246