Pairwise Alignments

Query, 241 a.a., 23S rRNA pseudouridine synthase E from Vibrio cholerae E7946 ATCC 55056

Subject, 573 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score = 82.4 bits (202), Expect = 2e-20
 Identities = 59/185 (31%), Positives = 96/185 (51%), Gaps = 17/185 (9%)

Query: 58  PLSPAER-KVILFNKPYDTLSQFTDGDGRKTLADYIP--IKDVYAAGRLDRDSEGLLILT 114
           P+   ER ++ L++KP   ++   D +GR T+ + +P  +  V + GRLD ++EGLL+LT
Sbjct: 99  PIRGIERTRLWLYHKPGGLVTTNADPEGRPTVFENLPEELPRVLSVGRLDINTEGLLLLT 158

Query: 115 NDGILQARLTQPQSKAPKTYWVQVEGSPQESDLEALRHGVTLKDGPTLPAKVDIMPEPTL 174
           NDG L   L  P +   + Y V+  G   +  L+ L+ G+ + DG    A      E TL
Sbjct: 159 NDGGLARVLELPSTGWLRRYRVRAHGEIDQEALDRLKEGIAV-DGVLYGA-----IEATL 212

Query: 175 WPRNPPVRFRAAIPTTWLAITLMEGRNRQVRRMTAHIGFPTLRLIRYSMGDWNLGDLQPG 234
                    R      W+ + L EG+NR+++ +   +G    RLIR S G + LG+L  G
Sbjct: 213 --------DRVQGSNVWITMGLREGKNREIKNVLGALGLDVNRLIRISYGPFQLGELPIG 264

Query: 235 EWREV 239
           + +E+
Sbjct: 265 QVQEI 269



 Score = 25.0 bits (53), Expect = 0.003
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 16  QRKSHFKQRAAKNAGHPPTRANRKSVANKKKNATQTA-LSPKRPLSPAERK 65
           +R+   K  AAK  G    R  +   +  +K+A        +RPL  AERK
Sbjct: 404 KRRDRPKDAAAKAGGFDAERQGKAGKSAGRKDAAGAGGFERRRPLESAERK 454