Pairwise Alignments

Query, 241 a.a., 23S rRNA pseudouridine synthase E from Vibrio cholerae E7946 ATCC 55056

Subject, 295 a.a., pseudouridine synthase, Rsu (RefSeq) from Shewanella amazonensis SB2B

 Score = 78.6 bits (192), Expect = 1e-19
 Identities = 60/181 (33%), Positives = 88/181 (48%), Gaps = 18/181 (9%)

Query: 65  KVILFNKPYDTLSQFTDGDGRKTLADYIP-IKDV--YAAGRLDRDSEGLLILTNDGILQA 121
           +V+ ++KP   +    D +GR T+ D +P ++D    A GRLD ++ GLL+ T+DG L  
Sbjct: 66  RVLAYHKPEGEICSRKDPEGRPTVFDRLPKLRDARWVAVGRLDINTSGLLLFTSDGELAN 125

Query: 122 RLTQPQSKAPKTYWVQVEGSPQESDLEALRHGVTLKDGPTLPAKVDIMPEPTLWPRNPPV 181
           RL  P ++  + Y V+  G   +  ++ LR GV L+DG   PA+ D +        N   
Sbjct: 126 RLMHPSNEVDREYAVRTFGEVNDFTIQKLRTGVMLEDG---PAQFDYVKAAGGEGVN--- 179

Query: 182 RFRAAIPTTWLAITLMEGRNRQVRRMTAHIGFPTLRLIRYSMGDWNLGDLQP-GEWREVT 240
                    W  + L EGRNR+VRR+         RLIR   G   L    P G W E+ 
Sbjct: 180 --------QWWHVGLREGRNREVRRLWESQEVQVSRLIRVRYGMIELPKTLPRGGWIELP 231

Query: 241 L 241
           L
Sbjct: 232 L 232