Pairwise Alignments

Query, 241 a.a., 23S rRNA pseudouridine synthase E from Vibrio cholerae E7946 ATCC 55056

Subject, 293 a.a., Pseudouridine synthase, Rsu (NCBI) from Rhodospirillum rubrum S1H

 Score =  104 bits (260), Expect = 2e-27
 Identities = 67/195 (34%), Positives = 100/195 (51%), Gaps = 17/195 (8%)

Query: 48  ATQTALSPKRPLSPAE-RKVILFNKPYDTLSQFTDGDGRKTLADYIP--IKDVYAAGRLD 104
           A+ T     +PL   E  ++  +NKP   ++   D  GR T+ + +P  +  V + GRLD
Sbjct: 48  ASDTVTVDGKPLPALEPARLWRYNKPIGLVTSHRDEQGRPTVFERLPATLPRVISVGRLD 107

Query: 105 RDSEGLLILTNDGILQARLTQPQSKAPKTYWVQVEGSPQESDLEALRHGVTLKDGPTLPA 164
            +SEGLL+LTNDG L  RL  P     + Y V+V G+P    L AL  GVT++       
Sbjct: 108 LNSEGLLLLTNDGELARRLEHPSQGWLRRYRVRVHGAPDPVKLAALEKGVTVEGVAYGSI 167

Query: 165 KVDIMPEPTLWPRNPPVRFRAAIPTTWLAITLMEGRNRQVRRMTAHIGFPTLRLIRYSMG 224
           +V +               R      WL+++L EG+NR++RR+  H+G P  RLIR + G
Sbjct: 168 RVALE--------------RQQGANAWLSVSLREGKNREIRRVMEHLGLPVSRLIRVAYG 213

Query: 225 DWNLGDLQPGEWREV 239
            + LG L+ G   E+
Sbjct: 214 PFQLGQLEEGTVDEI 228