Pairwise Alignments

Query, 241 a.a., 23S rRNA pseudouridine synthase E from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., putative ribosomal large subunit pseudouridine synthase B from Phaeobacter inhibens DSM 17395

 Score =  103 bits (256), Expect = 7e-27
 Identities = 62/181 (34%), Positives = 97/181 (53%), Gaps = 16/181 (8%)

Query: 61  PAERKVILFNKPYDTLSQFTDGDGRKTLADYIP--IKDVYAAGRLDRDSEGLLILTNDGI 118
           P   ++ +++KP   ++   D   R+T+ D +P  +  V   GRLD +SEGLL+LTNDG 
Sbjct: 103 PEPPRLWMYHKPSGLVTTTNDELDRRTIFDALPEDMPRVMTVGRLDLNSEGLLLLTNDGG 162

Query: 119 LQARLTQPQSKAPKTYWVQVEGSPQESDLEALRHGVTLKDGPTLPAKVDIMPEPTLWPRN 178
           ++ +L  P +   + Y V++ G P+++D E LR G+ ++     P  V +          
Sbjct: 163 IKRQLELPSTGWLRRYRVRINGRPKDTDFEPLRQGLVIEGERFQPMTVAL---------- 212

Query: 179 PPVRFRAAIPTTWLAITLMEGRNRQVRRMTAHIGFPTLRLIRYSMGDWNLGDLQPGEWRE 238
                R      WL I L EG+NR++RR    IGF   RL+R S G + LG+L+PGE  E
Sbjct: 213 ----DRQQGANAWLTIGLREGKNREIRRAIEDIGFTVNRLLRLSYGPFQLGNLKPGEVEE 268

Query: 239 V 239
           +
Sbjct: 269 L 269