Pairwise Alignments

Query, 241 a.a., 23S rRNA pseudouridine synthase E from Vibrio cholerae E7946 ATCC 55056

Subject, 232 a.a., ribosomal large subunit pseudouridine synthase E from Phaeobacter inhibens DSM 17395

 Score =  211 bits (537), Expect = 1e-59
 Identities = 102/180 (56%), Positives = 132/180 (73%), Gaps = 5/180 (2%)

Query: 65  KVILFNKPYDTLSQFTD----GDGRKTLADYIPIKDVYAAGRLDRDSEGLLILTNDGILQ 120
           ++I FNKPYD L QFTD       R TL+D+I +  VY AGRLDRDSEGL++LT+ G LQ
Sbjct: 3   RLIRFNKPYDVLPQFTDRGSDSSPRATLSDWIDLPGVYPAGRLDRDSEGLMLLTDHGRLQ 62

Query: 121 ARLTQPQSKAPKTYWVQVEGSPQESDLEALRHGVTLKDGPTLPAKVDIMPEPT-LWPRNP 179
           A ++ PQ K PKTYWVQVEG+P  + ++AL +GV LKDG T PAK  ++ EP  +W RNP
Sbjct: 63  AWISDPQHKMPKTYWVQVEGTPDAAAIQALANGVELKDGMTRPAKAALIEEPEGIWARNP 122

Query: 180 PVRFRAAIPTTWLAITLMEGRNRQVRRMTAHIGFPTLRLIRYSMGDWNLGDLQPGEWREV 239
           P+R R ++P +W+A+T+ EGRNRQVRRMTA +G PTLRLIR ++G W L  L PG W ++
Sbjct: 123 PIRVRKSVPDSWIALTIREGRNRQVRRMTAAVGHPTLRLIRAAIGIWTLDGLSPGTWEDL 182