Pairwise Alignments

Query, 241 a.a., 23S rRNA pseudouridine synthase E from Vibrio cholerae E7946 ATCC 55056

Subject, 238 a.a., pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score = 80.9 bits (198), Expect = 2e-20
 Identities = 64/197 (32%), Positives = 94/197 (47%), Gaps = 24/197 (12%)

Query: 49  TQTALS---PKRPLSP-AERKVILFNKPYDTLSQFTDGDGRKTLADYIPIKD-VYAAGRL 103
           TQ +LS      PL P A++   +FNK   T  +    D   +L   +P +  +Y  GRL
Sbjct: 49  TQASLSVCVDGEPLPPIADKAYWIFNKAVGTDCRLLAED-TTSLIHLLPRQPRLYPVGRL 107

Query: 104 DRDSEGLLILTNDGILQARLTQPQSKAPKTYWVQVEGSPQESDLEALRHGVTLKDGPTLP 163
           D+DS GLL+LTNDG L  RL  P     K Y V+++    +  +  +  GV+ KD  T P
Sbjct: 108 DKDSRGLLLLTNDGELTQRLMHPSFAHHKRYHVRLDRPFDDDFVVKMAAGVSYKDVTTQP 167

Query: 164 AKVDIMPEPTLWPRNPPVRFRAAIPTTWLAITLMEGRNRQVRRMTAHIGFPTLRLIRYSM 223
            +V  + + +                    I L +G NRQ+RRM+  +G   + L R ++
Sbjct: 168 CQVTRLGQDS------------------FEIVLTQGLNRQIRRMSKTLGHKVIDLKRVAI 209

Query: 224 GDWNLGDLQPGEWREVT 240
               LGDL  GE R +T
Sbjct: 210 ESLTLGDLPEGEMRPLT 226