Pairwise Alignments

Query, 241 a.a., 23S rRNA pseudouridine synthase E from Vibrio cholerae E7946 ATCC 55056

Subject, 230 a.a., pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score = 83.2 bits (204), Expect = 4e-21
 Identities = 62/201 (30%), Positives = 98/201 (48%), Gaps = 23/201 (11%)

Query: 45  KKNATQTALSPKRPLSPAERKVILFNKPYDTLSQFTDG--DGRKTLADYIPIKDVYAAGR 102
           K N +Q       P+S    + I+ +KP DTL    D        L D    +D++ AGR
Sbjct: 40  KLNESQQVCLDGEPISLIGPRFIMLHKPADTLCSTVDEVYPSVLNLLDLPHKEDLHIAGR 99

Query: 103 LDRDSEGLLILTNDGILQARLTQPQSKAPKTYWVQVEGSPQESDLEALRHGVTLK--DGP 160
           LD D+ GL+++T+DG    R+T P+ +  KTY VQ+    +   +E    G+ L+  +G 
Sbjct: 100 LDADTTGLVLITSDGQWSHRVTSPKRECGKTYLVQLADPLKAEWVEQFATGLALRSEEGL 159

Query: 161 TLPAKVDIMPEPTLWPRNPPVRFRAAIPTTWLAITLMEGRNRQVRRMTAHIGFPTLRLIR 220
           T PA ++++                        +T+ EG+  QV+RM A +G   + L R
Sbjct: 160 TKPATLELLGSHE------------------ARLTITEGKYHQVKRMFAAVGNKVVGLHR 201

Query: 221 YSMGDWNLGD-LQPGEWREVT 240
            S+G+  L + L PGEWR +T
Sbjct: 202 ESVGEIVLDESLAPGEWRYLT 222