Pairwise Alignments

Query, 241 a.a., 23S rRNA pseudouridine synthase E from Vibrio cholerae E7946 ATCC 55056

Subject, 293 a.a., pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score = 80.1 bits (196), Expect = 4e-20
 Identities = 59/181 (32%), Positives = 88/181 (48%), Gaps = 18/181 (9%)

Query: 65  KVILFNKPYDTLSQFTDGDGRKTLADYIP-IKDV--YAAGRLDRDSEGLLILTNDGILQA 121
           +VI ++KP   +    D +GR T+ D +P  +D    A GRLD ++ GLL+ T+DG L  
Sbjct: 71  RVIAYHKPEGEICSRKDPEGRPTVFDRLPKTRDSRWVAVGRLDINTSGLLLFTSDGELAN 130

Query: 122 RLTQPQSKAPKTYWVQVEGSPQESDLEALRHGVTLKDGPTLPAKVDIMPEPTLWPRNPPV 181
           RL  P  +  + Y V+  G   ++ ++ LR GVTL+DGP    K+       +       
Sbjct: 131 RLMHPSHEVEREYAVRTFGEVTDACIQRLRSGVTLEDGPAHFDKIKPAGGEGM------- 183

Query: 182 RFRAAIPTTWLAITLMEGRNRQVRRMTAHIGFPTLRLIRYSMGDWNLGDLQP-GEWREVT 240
                    W  ++L EGRNR+VRR+         RLIR   G  +L    P G W E+ 
Sbjct: 184 -------NKWWHVSLAEGRNREVRRLWESQEVQVSRLIRIRYGMIDLPKSLPRGGWVELP 236

Query: 241 L 241
           +
Sbjct: 237 I 237