Pairwise Alignments

Query, 241 a.a., 23S rRNA pseudouridine synthase E from Vibrio cholerae E7946 ATCC 55056

Subject, 264 a.a., pseudouridylate synthase (RefSeq) from Shewanella loihica PV-4

 Score =  267 bits (682), Expect = 2e-76
 Identities = 130/236 (55%), Positives = 167/236 (70%), Gaps = 4/236 (1%)

Query: 6   SSDATSSSSDQRKSHFKQRAAKNAGHPPTRANRKSVANKKKNATQTALSPKRPLSPAERK 65
           S++  +S     K++     +K   + P R    + A   K+  +    P+    P  R 
Sbjct: 24  SANKLASRRQGAKTNAPATKSKGNSYQPKRGGGATAAEGVKHKPKLKAKPRSKPKPKPRP 83

Query: 66  ----VILFNKPYDTLSQFTDGDGRKTLADYIPIKDVYAAGRLDRDSEGLLILTNDGILQA 121
               ++LFNKP+D L QFTD  GR+TL D+IPI+DVYAAGRLDRDSEGLL+LTNDG LQ+
Sbjct: 84  QNPIIVLFNKPFDVLCQFTDEQGRQTLKDFIPIQDVYAAGRLDRDSEGLLLLTNDGQLQS 143

Query: 122 RLTQPQSKAPKTYWVQVEGSPQESDLEALRHGVTLKDGPTLPAKVDIMPEPTLWPRNPPV 181
           R+T+P+ K  KTYWVQVEG P +  ++ALR GVTLKDGPTLPAKV+ + EP +WPRNPPV
Sbjct: 144 RITEPKKKTDKTYWVQVEGIPSDEAIQALRDGVTLKDGPTLPAKVERIAEPDVWPRNPPV 203

Query: 182 RFRAAIPTTWLAITLMEGRNRQVRRMTAHIGFPTLRLIRYSMGDWNLGDLQPGEWR 237
           R R  IPT+WLAIT+ EGRNRQVRRMTAH+G+PTLRLIRY +G W+L  +  GE++
Sbjct: 204 RERKQIPTSWLAITICEGRNRQVRRMTAHVGYPTLRLIRYKIGQWSLNGVANGEYK 259