Pairwise Alignments

Query, 241 a.a., 23S rRNA pseudouridine synthase E from Vibrio cholerae E7946 ATCC 55056

Subject, 182 a.a., pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score =  114 bits (284), Expect = 2e-30
 Identities = 75/176 (42%), Positives = 102/176 (57%), Gaps = 16/176 (9%)

Query: 71  KPYDTLSQFTDGDGRKT------LADYIPIKDVYAAGRLDRDSEGLLILTNDGILQARLT 124
           KPY  LSQF  G+ RK       LA++     + A GRLD DSEGLL+LT DG     + 
Sbjct: 4   KPYGYLSQFV-GERRKRKPLLGELANFPT--GIMAIGRLDHDSEGLLLLTTDGKTSHAVR 60

Query: 125 QPQSKAPKTYWVQVEGSPQESDLEALRHGVTL----KDGPTLPAKVDIMPE-PTLWPRNP 179
               +  K Y++Q++G   E  + +L  GV +    +   TLP +   + + P L PR  
Sbjct: 61  SKSIE--KEYYLQLDGEITEQAISSLCEGVEIGIKGEKYRTLPCRARRLDQAPDLPPRGR 118

Query: 180 PVRFRAAIPTTWLAITLMEGRNRQVRRMTAHIGFPTLRLIRYSMGDWNLGDLQPGE 235
            +R     PT+WLAIT+ EG+NRQ+R+MTA +GF TLRL+R  +GD  LG LQPGE
Sbjct: 119 KIRDARHGPTSWLAITITEGKNRQLRKMTAAVGFATLRLVRVRIGDIRLGTLQPGE 174