Pairwise Alignments

Query, 241 a.a., 23S rRNA pseudouridine synthase E from Vibrio cholerae E7946 ATCC 55056

Subject, 327 a.a., RNA-binding S4 domain protein from Marinobacter adhaerens HP15

 Score = 83.6 bits (205), Expect = 4e-21
 Identities = 58/180 (32%), Positives = 90/180 (50%), Gaps = 18/180 (10%)

Query: 64  RKVILFNKPYDTLSQFTDGDGRKTLADYIPIKDVY---AAGRLDRDSEGLLILTNDGILQ 120
           R+V+++NKP   ++   D +GR T+ D +P    +   + GRLD ++ GL++ T DG L 
Sbjct: 85  RRVLIYNKPEGEVTTRKDPEGRPTVFDRLPRLKEHRWISIGRLDINTTGLVLFTTDGELA 144

Query: 121 ARLTQPQSKAPKTYWVQVEGSPQESDLEALRHGVTLKDGPTLPAKVDIMPEPTLWPRNPP 180
            RL  P ++  + Y V++ G   ++ +E L  GV L+DG  +    DI P          
Sbjct: 145 NRLMHPSNQIDREYAVRIFGEVDDAKIERLLQGVLLEDG--MAKFTDISPA--------- 193

Query: 181 VRFRAAIPTTWLAITLMEGRNRQVRRMTAHIGFPTLRLIRYSMGDWNL-GDLQPGEWREV 239
                +    W  +TL+EGRNR+VRR+    G    RL R   G   L   L  G+W E+
Sbjct: 194 ---GGSGINRWFHVTLLEGRNREVRRLWESQGVRVSRLKRVRYGPIFLPSRLTVGKWEEL 250