Pairwise Alignments

Query, 241 a.a., 23S rRNA pseudouridine synthase E from Vibrio cholerae E7946 ATCC 55056

Subject, 269 a.a., ribosomal large subunit pseudouridine synthase E (RefSeq) from Shewanella sp. ANA-3

 Score =  261 bits (667), Expect = 1e-74
 Identities = 137/244 (56%), Positives = 164/244 (67%), Gaps = 10/244 (4%)

Query: 2   SSRLSSDATSSSSDQRKSHFKQRA-AKNAGHPPTRANRKSVANKKKNATQTALSPKRPLS 60
           S +  +   ++ +D R S  K    AKNA     +       + K+N+ + + +  RP  
Sbjct: 16  SGKRPATGRANPADNRNSAKKPHTFAKNAKPSLQQGANSERHSAKRNSAERSGAKSRPQQ 75

Query: 61  PA---------ERKVILFNKPYDTLSQFTDGDGRKTLADYIPIKDVYAAGRLDRDSEGLL 111
            +         E  ++LFNKP+D L QFTD  GRKTL DYIPI  VYAAGRLDRDSEGLL
Sbjct: 76  RSTAARTKPQGEPMIVLFNKPFDVLCQFTDEQGRKTLKDYIPIPGVYAAGRLDRDSEGLL 135

Query: 112 ILTNDGILQARLTQPQSKAPKTYWVQVEGSPQESDLEALRHGVTLKDGPTLPAKVDIMPE 171
           +LTNDG LQA+LT+P+ K  KTYWVQVEG P ++DL  LR GV LKDG TLPAKV IM  
Sbjct: 136 LLTNDGQLQAKLTEPKKKTFKTYWVQVEGEPTDADLAKLRQGVELKDGITLPAKVSIMAT 195

Query: 172 PTLWPRNPPVRFRAAIPTTWLAITLMEGRNRQVRRMTAHIGFPTLRLIRYSMGDWNLGDL 231
           P +WPRNPP+R R  IPTTWL I + EGRNRQVRRMTAHIGFPTLRLIRY +G W+L DL
Sbjct: 196 PNVWPRNPPIRERKNIPTTWLEIQIHEGRNRQVRRMTAHIGFPTLRLIRYKIGQWSLDDL 255

Query: 232 QPGE 235
             GE
Sbjct: 256 ATGE 259