Pairwise Alignments

Query, 241 a.a., 23S rRNA pseudouridine synthase E from Vibrio cholerae E7946 ATCC 55056

Subject, 236 a.a., pseudouridine synthase, Rsu (RefSeq) from Shewanella sp. ANA-3

 Score = 82.8 bits (203), Expect = 6e-21
 Identities = 62/187 (33%), Positives = 92/187 (49%), Gaps = 21/187 (11%)

Query: 56  KRPLSPAER-KVILFNKPYDTLSQFTDGDGRKTLADYIPIKD-VYAAGRLDRDSEGLLIL 113
           ++P+S AE     +FNK   T  +  D D + +L   +P    +Y  GRLD+DS GLL+L
Sbjct: 56  EKPISGAEALSYWIFNKAVGTDCRLLDAD-KSSLLHLLPTTPRLYPVGRLDKDSRGLLLL 114

Query: 114 TNDGILQARLTQPQSKAPKTYWVQVEGSPQESDLEALRHGVTLKDGPTLPAKVDIMPEPT 173
           TNDG L  +L  P     KTY VQ++    ++ +  +  GV  K+  TLP +V       
Sbjct: 115 TNDGELTHKLMHPSFAHSKTYHVQLDRPFNDAFIAQMASGVQYKEVRTLPCQV------- 167

Query: 174 LWPRNPPVRFRAAIPTTWLAITLMEGRNRQVRRMTAHIGFPTLRLIRYSMGDWNLGDLQP 233
              R    RF          I L +G NRQ+RRM+  +G+  + L R ++    L  L  
Sbjct: 168 --TRLSADRFE---------IVLTQGLNRQIRRMSNALGYKVIDLQRVALMTLTLASLAE 216

Query: 234 GEWREVT 240
           GE R ++
Sbjct: 217 GEMRPLS 223