Pairwise Alignments

Query, 533 a.a., Na+/H+ antiporter from Vibrio cholerae E7946 ATCC 55056

Subject, 520 a.a., Na+/H+ antiporter NhaC (RefSeq) from Shewanella amazonensis SB2B

 Score =  563 bits (1451), Expect = e-165
 Identities = 285/514 (55%), Positives = 375/514 (72%), Gaps = 6/514 (1%)

Query: 1   MNLIDFASSPLSVLPPLVALSLAIVTRRVLLSLGVGIFLGALLLADYSIGQSLQYIATQV 60
           M LI +A S LS+LPP+VA+ LA++TR+VLLSLG+GI  G LLL D++   S +++A +V
Sbjct: 1   MTLISYADSALSLLPPVVAIVLAVLTRKVLLSLGLGILTGTLLLNDFAPLASAEFLAHRV 60

Query: 61  GSVFVKEGAINAWNMSIVGFLLLLGMMTALLTLSGGTRAFAQWAQVRVKSKRGSKLLAAF 120
            ++   +GA+N+WN+ I+GFLLLLGM+TAL+T+SG  RAFA WA+ R++ KR +KLL  F
Sbjct: 61  TNLVWSDGALNSWNLYILGFLLLLGMITALITVSGAARAFADWARQRIRCKRDAKLLTMF 120

Query: 121 LGVFIFVDDYFNSLAVGSISRPVTDRFYVSRAKLAYILDSTAAPMCVVMPASSWGAYIMT 180
           LG  +F+DDYFNSL VGSISRP+TDR+Y+SRAKLAY+LDSTAAP+CV+ P SSWGAYI+ 
Sbjct: 121 LGCVVFIDDYFNSLVVGSISRPLTDRYYISRAKLAYLLDSTAAPVCVISPVSSWGAYIIA 180

Query: 181 IIGGILVSHGIEEYSALGAYLRLVPMNFYAIFALLMVFAVVWFQMDIGQMRKHEIAASQG 240
           +IGGIL SHG+ +   L  +++++PMNFYAIFALL++  V +  +D+G M+ HE  A +G
Sbjct: 181 LIGGILASHGMSDAGHLSVFIQMIPMNFYAIFALLLLLCVAFMGLDVGPMKTHEQNAMRG 240

Query: 241 RGFDEDPSTDTQEAHELNEELDIRESERGTVLDLVLPIVFLVVATIGAMIWTGASALAES 300
             +DE   T    + EL       E++ G +  L +PI  LV AT+  MI +GASALA+ 
Sbjct: 241 NLYDEAKGTPPGASAEL------PEADTGHIAGLFVPISTLVFATLFFMIQSGASALADE 294

Query: 301 GQSFDIFGAFENTNVGTSLVYGGLVGLAMAFVTVLRQKLPTAEIAKTLWIGAKSMFGAIL 360
              F + GAFE T+VG SL +G LVGL +  V  + QKL +  I   L  GA+SM  AI 
Sbjct: 295 KLPFSLIGAFEKTDVGGSLFFGALVGLGVTLVQAMVQKLESKLIITALTQGARSMVPAIY 354

Query: 361 ILIFAWTIGSVIGDMKTGAYLSSLVQGNIDPHWLPVILFVLSGAMAFSTGTSWGTFGIML 420
           IL+FAWTI  +IG+++TG +++SL  GNI    LP ++FVL+G  AF+TGTSWGTFGIML
Sbjct: 355 ILLFAWTIAGIIGELETGKFMASLASGNIPFALLPAVMFVLAGLTAFATGTSWGTFGIML 414

Query: 421 PIAGDMAGATDIALMLPMLGAVLAGSVFGDHCSPISDTTILSSTGARCHHIDHVATQLPY 480
           PIA DMA  +  ++MLPML AVLAG+VFGDHCSPISDTTILSSTGA CHHIDHV TQLPY
Sbjct: 415 PIAADMAMGSHTSMMLPMLAAVLAGAVFGDHCSPISDTTILSSTGASCHHIDHVVTQLPY 474

Query: 481 ALAVALVSAIGYVVLGIFASLGLALAAASVSFVV 514
           AL VA++S  GY V+G   S+      +SV FV+
Sbjct: 475 ALIVAVISLAGYTVMGFTESVWAGFGTSSVLFVL 508