Pairwise Alignments

Query, 533 a.a., Na+/H+ antiporter from Vibrio cholerae E7946 ATCC 55056

Subject, 525 a.a., Na+/H+ antiporter NhaC family protein from Methanococcus maripaludis JJ

 Score =  390 bits (1003), Expect = e-113
 Identities = 226/526 (42%), Positives = 328/526 (62%), Gaps = 27/526 (5%)

Query: 11  LSVLPPLVALSLAIVTRRVLLSLGVGIFLGALLLADYSIGQSLQYIA-TQVGSVFVKE-- 67
           LS+LPP+VA+ LA++T+RV +SL +GI  G+LL  +++I  S  +I  T +GSV +    
Sbjct: 6   LSLLPPVVAIGLALITKRVYMSLFLGILAGSLLYNNWNIVASASHIVNTIIGSVELTSIT 65

Query: 68  ------GAINAWNMSIVGFLLLLGMMTALLTLSGGTRAFAQWAQVRVKSKRGSKLLAAFL 121
                 G  N WN+ I+ FL++LG++ AL+T +GG  A+  WA  ++KSK G+ L  + L
Sbjct: 66  GISSFTGVGNLWNLLILLFLVMLGILIALITRAGGALAYGNWASTKIKSKEGASLSTSLL 125

Query: 122 GVFIFVDDYFNSLAVGSISRPVTDRFYVSRAKLAYILDSTAAPMCVVMPASSWGAYIMTI 181
           G+ +F+DDYFN L VG++ +P+TD+F +SRAKLAYI+DSTAAP+C++MP SSW A ++  
Sbjct: 126 GILLFIDDYFNCLTVGTVMKPITDKFKISRAKLAYIIDSTAAPVCILMPVSSWFAAVVGN 185

Query: 182 IGGILVSHG-IEEYSALGAYLRLVPMNFYAIFALLMVFAVVWF-QMDIGQMRKHE-IAAS 238
           +G   V  G +   S  G +   +  N YA+ AL MV  ++ F +MD G M+ HE +A  
Sbjct: 186 LGESGVGTGALSSMSPSGVFFSAILYNTYALVALFMVAFIISFKKMDFGPMKVHEKVATE 245

Query: 239 QGRGFDEDPSTDTQEAHELNEELDIRESERGTVLDLVLPIVFLVVATIGAMIWTGASALA 298
            G  F+ D  T   E+       +I     G +  LVLP+V L++A I A + +G    A
Sbjct: 246 TGDLFNGDAETAAIES-------EIEPLSGGKISYLVLPLVVLILAIIFAFMISG-GLFA 297

Query: 299 ESGQSFDIFGAFENTNVGTSLVYGGLVGLAMAFVTVLRQK-LPTAEIAKTLWIGAKSMFG 357
            +G    +  +F + +    L +GGL+ L    +     K +P  +IA     G+K M  
Sbjct: 298 GAG----VIESFLSMDASWGLFWGGLISLLFTVIYFTASKAVPVNDIAGLFAKGSKLMLP 353

Query: 358 AILILIFAWTIGSVIGDMKTGAYLSSLVQGNIDPHWLPVILFVLSGAMAFSTGTSWGTFG 417
           AI ILI AW++GSVIGD+ TG YLSSL+Q ++    LP ILF+LSG MAFSTGTSWGTFG
Sbjct: 354 AITILILAWSLGSVIGDLGTGTYLSSLIQNSLPVQILPAILFLLSGFMAFSTGTSWGTFG 413

Query: 418 IMLPIAGDMA-GATDIALMLPMLGAVLAGSVFGDHCSPISDTTILSSTGARCHHIDHVAT 476
           IMLPIA  MA G      ++P + AVL G+++GDH SPISDTTI+SSTGA   HIDHV T
Sbjct: 414 IMLPIAVPMAVGLGMPEFVVPFVAAVLGGAIYGDHSSPISDTTIMSSTGAGTKHIDHVQT 473

Query: 477 QLPYALAVALVSAIGYVVLGIFASLGLALAA-ASVSFVVVCLIFAA 521
           QLPY   + +++ +GY+++G   +LG  ++   +++FV   +   A
Sbjct: 474 QLPYTTLIGIMAFLGYLIVGYTINLGYWVSGLINLAFVAFAVYIGA 519