Pairwise Alignments

Query, 533 a.a., Na+/H+ antiporter from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., Na+/H+ antiporter NhaC (RefSeq) from Shewanella sp. ANA-3

 Score =  226 bits (576), Expect = 1e-63
 Identities = 162/501 (32%), Positives = 259/501 (51%), Gaps = 64/501 (12%)

Query: 11  LSVLPPLVALSLAIVTRRVLLSLGVGIFLGALLLADYSIGQSLQYIATQVGSVFVKEGAI 70
           LS++PPLV L LAI  RR +LSL +G   G LLL      Q L   A+    V   E   
Sbjct: 7   LSLIPPLVVLVLAIWLRRPILSLIIGAVTGFLLLDP---SQVLNNFASTSLKVMADE--- 60

Query: 71  NAWNMSIVGFLLLL----GMMTALLTLSGGTRAFAQWAQVRVKSKRGSKLLAAFLGVFIF 126
                  +G+L+L+    G + ALL  +GG  AF + A    K  + S  +   LG+ IF
Sbjct: 61  ------TIGWLILVCGCFGALIALLVRTGGALAFGRNALKFAKGPKSSLFMTFILGIVIF 114

Query: 127 VDDYFNSLAVGSISRPVTDRFYVSRAKLAYILDSTAAPMCVVMPASSWGAYIMTIIGGIL 186
           +DDY N+L VG   + VTD+F VSR  LAY++DSTAAP+CV++P S+W  +     GG+L
Sbjct: 115 IDDYLNALTVGETMKRVTDKFKVSREMLAYVVDSTAAPVCVLVPLSTWAVF----FGGLL 170

Query: 187 VSHGI-EEYSALGAYLRLVPMNFYAIFALLMVFAVVWFQMD-IGQMRKHEIAASQGR--- 241
           V +G+  E   +  Y++ +P   YA  A+ MV  VV   +  IG M+K ++ A+QG    
Sbjct: 171 VDNGVAAEGQGISVYMQAIPYMLYAWLAVAMVLLVVLGVVPAIGPMKKAQLRAAQGEPAE 230

Query: 242 ---GFDEDPSTDTQEAHELNEELDIRESERGTVLDLVLPIVFLVVATIGAMIWTGASALA 298
                D+  ++D      + EE    +++ G + + ++PI+ LV  T+            
Sbjct: 231 AQVDLDQVQTSDEYAIAAIEEEFKHADNQ-GKLHNFLVPILLLVAFTV------------ 277

Query: 299 ESGQSFDIFGAFENTNVGTSLVYGGLVGLAMAFVTV----LRQKLPTAEIAKTLWIGAKS 354
                FDI             V+ GL  LA   +T+    +++ +P +E+   +  G KS
Sbjct: 278 ----YFDID------------VWKGL--LATLVITLPYYAVQRLMPLSEMMDQMIDGFKS 319

Query: 355 MFGAILILIFAWTIGSVIGDMKTGAYLSSLVQGNIDPHWLPVILFVLSGAMAFSTGTSWG 414
           M  AI  +I A+    V   +    Y+   +   + P  LP ++F+    +AF+TG+SWG
Sbjct: 320 MLPAIGTVIAAFVFKDVCDALLLPQYVIESLSPFMTPKMLPAVVFLSMAILAFATGSSWG 379

Query: 415 TFGIMLPIAGDMAGATDIALMLPMLGAVLAGSVFGDHCSPISDTTILSSTGARCHHIDHV 474
            F + +PI   +A +    + L ++GA+L+ S FG      SD+T+L++ G+ C+ + H 
Sbjct: 380 IFAVTIPIVMPLAQSVGADIPL-VIGALLSASSFGSQACFYSDSTVLAAQGSGCNLVSHA 438

Query: 475 ATQLPYALAVALVSAIGYVVL 495
            TQLPYAL  A+++  G++++
Sbjct: 439 VTQLPYALIAAVIAFFGFILI 459