Pairwise Alignments

Query, 137 a.a., DNA-binding protein H-NS from Vibrio cholerae E7946 ATCC 55056

Subject, 130 a.a., H-NS family DNA-binding protein (RefSeq) from Shewanella amazonensis SB2B

 Score = 95.9 bits (237), Expect = 2e-25
 Identities = 55/136 (40%), Positives = 86/136 (63%), Gaps = 7/136 (5%)

Query: 3   MSEITKTLLNIRSLRAYARELTIEQLEEALDKLTTVVQERKEAEAEEIAARAEQEAKLAA 62
           MSE  + L + R L+A  ++L++++L +   KL  ++ ER+    EE+ A AE+ AK+  
Sbjct: 1   MSEFLEILTHGRRLKAAVKDLSLDELRDLGAKLEKIIVEREAEAEEELKANAERIAKIEE 60

Query: 63  IAEQIAKDGIDLEALISALSGETKTK-AKGKRAPRPAKYKYIDTNGEEKTWTGQGRTPSV 121
           I +Q+A+ G+ +E L     G T  K A  KRAPRP KYK +  +GEE TWTGQGR P+V
Sbjct: 61  IRKQMAEIGLSVEDL-----GVTAAKPAAKKRAPRPPKYKIV-VDGEEITWTGQGRMPTV 114

Query: 122 IQKALDEGKSLEEFAL 137
            + A++ G S+++F +
Sbjct: 115 FKNAVEGGASMDDFLI 130