Pairwise Alignments

Query, 137 a.a., DNA-binding protein H-NS from Vibrio cholerae E7946 ATCC 55056

Subject, 130 a.a., histone family protein nucleoid-structuring protein H-NS (RefSeq) from Shewanella loihica PV-4

 Score = 99.4 bits (246), Expect = 2e-26
 Identities = 56/136 (41%), Positives = 83/136 (61%), Gaps = 7/136 (5%)

Query: 3   MSEITKTLLNIRSLRAYARELTIEQLEEALDKLTTVVQERKEAEAEEIAARAEQEAKLAA 62
           MSE    L + R  +A  ++L++E L++   KL  ++ E+++   EE A  AE+ AK+  
Sbjct: 1   MSEFLDILTHGRRFKAAVKDLSVEDLKDVAVKLEKIITEKEKQAEEESAVMAERNAKIEE 60

Query: 63  IAEQIAKDGIDLEALISALSGETKTK-AKGKRAPRPAKYKYIDTNGEEKTWTGQGRTPSV 121
           I +Q+   G+ ++ L     G    K A  KRAPRP KYK I+ NGE  TWTGQGRTP+V
Sbjct: 61  IRQQMEAVGLSIDDL-----GTVAAKPAPKKRAPRPPKYK-IEVNGETITWTGQGRTPTV 114

Query: 122 IQKALDEGKSLEEFAL 137
            +  LD+G+SLE+F +
Sbjct: 115 FKNELDKGRSLEDFLI 130