Pairwise Alignments

Query, 137 a.a., DNA-binding protein H-NS from Vibrio cholerae E7946 ATCC 55056

Subject, 130 a.a., DNA-binding protein, H-NS family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 91.7 bits (226), Expect = 4e-24
 Identities = 50/135 (37%), Positives = 82/135 (60%), Gaps = 5/135 (3%)

Query: 3   MSEITKTLLNIRSLRAYARELTIEQLEEALDKLTTVVQERKEAEAEEIAARAEQEAKLAA 62
           MSE  + L + R  +A  ++L++E+L +   KL  ++ ER+  EAEE+ A A + AK+  
Sbjct: 1   MSEFLEILTHGRRFKAAVKDLSVEELRDLAAKLDKILVERESMEAEELQAIAARNAKIEE 60

Query: 63  IAEQIAKDGIDLEALISALSGETKTKAKGKRAPRPAKYKYIDTNGEEKTWTGQGRTPSVI 122
           I +Q+   G+     I  L G     +  KRAPRPAKY+ I+ +GE   WTGQGR P+V 
Sbjct: 61  IRQQMEAVGLS----IDDLGGVAVKASSKKRAPRPAKYQ-IEVDGEVIQWTGQGRMPTVF 115

Query: 123 QKALDEGKSLEEFAL 137
           +  +++G+S+++F +
Sbjct: 116 KNEVNKGRSMDDFLI 130