Pairwise Alignments

Query, 137 a.a., DNA-binding protein H-NS from Vibrio cholerae E7946 ATCC 55056

Subject, 130 a.a., histone family protein nucleoid-structuring protein H-NS (RefSeq) from Shewanella sp. ANA-3

 Score = 91.7 bits (226), Expect = 4e-24
 Identities = 53/136 (38%), Positives = 83/136 (61%), Gaps = 7/136 (5%)

Query: 3   MSEITKTLLNIRSLRAYARELTIEQLEEALDKLTTVVQERKEAEAEEIAARAEQEAKLAA 62
           MSE  + L + R  +A  ++L+IE+L +   KL  ++ ER+   AEE  A A + AK+  
Sbjct: 1   MSEFLEILTHGRRFKAAVKDLSIEELRDLAAKLDKILVERESMAAEEQQAIAARNAKIEE 60

Query: 63  IAEQIAKDGIDLEALISALSGETKTKAKG-KRAPRPAKYKYIDTNGEEKTWTGQGRTPSV 121
           I +Q+   G+ ++ L     G    KA G KRAPRPAKY+ I+ NGE   WTGQGR P+V
Sbjct: 61  IRQQMEAVGLSIDDL-----GGVAVKAAGKKRAPRPAKYQ-IEVNGEVIQWTGQGRMPTV 114

Query: 122 IQKALDEGKSLEEFAL 137
            +  +++G+S+++F +
Sbjct: 115 FKNEVNKGRSMDDFLI 130