Pairwise Alignments

Query, 435 a.a., serine--tRNA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 428 a.a., seryl-tRNA synthetase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  600 bits (1548), Expect = e-176
 Identities = 298/435 (68%), Positives = 354/435 (81%), Gaps = 7/435 (1%)

Query: 1   MLDSKLLRTELDETAAKLARRGFKLDVETIRTLEEQRKSIQVEVENLQSTRNSISKQIGQ 60
           MLD K LR EL  TA +LA RGF LDV  +  LEE+RKS+QV  E LQ++RN+ISK IGQ
Sbjct: 1   MLDPKFLRNELAVTAERLATRGFILDVAHLTQLEEKRKSLQVATEELQASRNAISKSIGQ 60

Query: 61  LMASGDKAGAEAVKQQIGTLGDDLDAKKVELDAVMAQLDAITQTVPNIPDDAVPNGKDDS 120
             A G+    +A+  Q+G LG  LDAKKVEL AV+ +++AI  ++PN+PD++ P G D++
Sbjct: 61  AKARGEDV--DAIMAQVGDLGAQLDAKKVELAAVLEEVNAIAMSMPNLPDESAPIGADET 118

Query: 121 ENVEVSRWGTPKTYDFEVKDHVDLGEMGDGLDFASATKITGARFVVMKGQFARLHRAIAQ 180
           ENVEV RWG+P+++DF +KDH+DLGE  +GLDF SA KITG+RF+VMKGQ ARL+RA+ Q
Sbjct: 119 ENVEVRRWGSPRSFDFPIKDHIDLGEGLNGLDFKSAVKITGSRFIVMKGQIARLNRALGQ 178

Query: 181 FMLDLHTDQHGYTELYVPYLVNAETLFGTGQLPKFGQDLFHTEPLTEKASDEEPRRLSLI 240
           FMLDLHT +HGYTE YVP LVN  +L GTGQLPKFG+DLFHT+P TE     E + LSLI
Sbjct: 179 FMLDLHTTEHGYTEAYVPLLVNEASLLGTGQLPKFGEDLFHTKPATE-----EGQGLSLI 233

Query: 241 PTAEVPVTNLVRDTILDEAELPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI 300
           PTAEVP+TNLVRD+I+DE ELP+K+TAHT CFRSEAGSYG+DTRGLIR HQFDKVELVQ+
Sbjct: 234 PTAEVPLTNLVRDSIVDEDELPIKLTAHTACFRSEAGSYGKDTRGLIRQHQFDKVELVQL 293

Query: 301 TRPEDSMAALEELTGHAEKVLQLLELPYRKVILCTGDMGFGSCKTYDLEVWVPAQKTYRE 360
            +PEDSMAALE LTGHAE VLQ L LPYR V+LCTGDMGFGS KTYD+EVW+P Q TYRE
Sbjct: 294 VKPEDSMAALEVLTGHAETVLQRLGLPYRTVVLCTGDMGFGSSKTYDIEVWLPGQNTYRE 353

Query: 361 ISSCSNMWDFQARRMQARFRRKGEKKPELVHTLNGSGLAVGRTMVAILENYQEADGRIAI 420
           ISSCSNM DFQARRMQAR+R K + KP L+HTLNGSGLAVGRT+VAILENYQ ADG + +
Sbjct: 354 ISSCSNMKDFQARRMQARYRVKADNKPVLLHTLNGSGLAVGRTLVAILENYQNADGSVTV 413

Query: 421 PAVLQKYMGGLTHIG 435
           P  L+ YMGGLT IG
Sbjct: 414 PEALRPYMGGLTQIG 428