Pairwise Alignments

Query, 435 a.a., serine--tRNA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 424 a.a., seryl-tRNA synthetase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  439 bits (1129), Expect = e-128
 Identities = 225/434 (51%), Positives = 294/434 (67%), Gaps = 12/434 (2%)

Query: 1   MLDSKLLRTELDETAAKLARRGFKLDVETIRTLEEQRKSIQVEVENLQSTRNSISKQIGQ 60
           MLD KLL+   +  A  LA R   +D+ T  TL+ +R+++  EVE+L+S RN  S ++ +
Sbjct: 1   MLDLKLLQKNPEVVAKALAMRHSDIDIATFTTLDTRRRALLTEVESLKSERNKASAEVAK 60

Query: 61  LMASGDKAGAEAVKQQIGTLGDDLDAKKVELDAVMAQLDAITQTVPNIPDDAVPNGKDDS 120
              +G+ A A  + +++G + + + A  +E +AV ++ +    T+PNIP ++VP G+D++
Sbjct: 61  AKRAGEDASA--LIERLGGVSERIKALDLEAEAVKSEQNDWMLTIPNIPHESVPEGRDEN 118

Query: 121 ENVEVSRWGTPKTYDFEVKDHVDLGEMGDGLDFASATKITGARFVVMKGQFARLHRAIAQ 180
           +NVEV RWGTP+ + F  ++H D+G    GLDF  A K+ G+RF V     ARL RA+A 
Sbjct: 119 DNVEVLRWGTPRAFSFTPREHWDIGVALGGLDFERAGKLAGSRFTVYWKWAARLERALAN 178

Query: 181 FMLDLHTDQHGYTELYVPYLVNAETLFGTGQLPKFGQDLFHTEPLTEKASDEEPRRLSLI 240
           + LD H   +GYTE+  P++VN +T+ GTGQLPKF +DLF  E               LI
Sbjct: 179 YFLDTHISANGYTEVLPPFMVNRKTMTGTGQLPKFEEDLFRLESWD----------YFLI 228

Query: 241 PTAEVPVTNLVRDTILDEAELPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQI 300
           PTAEVP+TNL  D IL+E +LPL  TA TPCFRSEAGSYG+DTRGLIR HQF KVE+V+ 
Sbjct: 229 PTAEVPLTNLHADEILEEGDLPLGYTAQTPCFRSEAGSYGKDTRGLIRQHQFTKVEMVRF 288

Query: 301 TRPEDSMAALEELTGHAEKVLQLLELPYRKVILCTGDMGFGSCKTYDLEVWVPAQKTYRE 360
             PE S   LE + GHAE +LQ L LPYR + LC+GDMGF + KTYDLEVW+P Q  YRE
Sbjct: 289 AHPERSFDELERMRGHAEALLQNLGLPYRVITLCSGDMGFSATKTYDLEVWLPGQDKYRE 348

Query: 361 ISSCSNMWDFQARRMQARFRRKGEKKPELVHTLNGSGLAVGRTMVAILENYQEADGRIAI 420
           ISSCSN  DFQARR   RFR  G  KPE VHTLNGSGLAVGRT+VA+LENYQ+ DG + +
Sbjct: 349 ISSCSNCGDFQARRANIRFRPAGGGKPEFVHTLNGSGLAVGRTLVAVLENYQQEDGSVIV 408

Query: 421 PAVLQKYMGGLTHI 434
           P VL+ YMGGL  I
Sbjct: 409 PEVLRPYMGGLERI 422