Pairwise Alignments

Query, 449 a.a., replication-associated recombination protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 436 a.a., recombination factor protein RarA from Sinorhizobium meliloti 1021

 Score =  371 bits (953), Expect = e-107
 Identities = 198/420 (47%), Positives = 269/420 (64%), Gaps = 10/420 (2%)

Query: 15  RPLAARMRPQTVEQYIGQQHILGPGKPLRRALEAGHIHSMILWGPPGTGKTTLAEVAANY 74
           RPLA R+RP+T+ +  GQ+H+ GP   L R + +G + SMI WGPPGTGKTT+A + +  
Sbjct: 17  RPLADRLRPRTLAEVTGQEHLTGPDGVLTRMIASGSLGSMIFWGPPGTGKTTVARLLSGE 76

Query: 75  ANAEVERVSAVTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDG 134
           A    E++SA+ SGV +++   E AR  ++SGR+T+LFVDE+HRFN++QQD+FLP +EDG
Sbjct: 77  AGLAFEQISAIFSGVADLKKVFESARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDG 136

Query: 135 TVTFIGATTENPSFELNNALLSRARVYKLTSLNQQEILQALHQAIADTERGLGKVAAVFA 194
           TV  +GATTENPSFELN ALLSRARV      ++  + + L +A A   + L        
Sbjct: 137 TVILVGATTENPSFELNAALLSRARVLTFKPHDEASLEELLKRAEAAEGKPL-----PLD 191

Query: 195 DNVLDRLAELVNGDARMSLNYLELLYDMAREDDQGRKQIDLPLLAEVAGEKVSRFDNKGD 254
           D     L  + +GD R  L   E ++  AR ++      D   L E+   +   +D   D
Sbjct: 192 DEARASLIRMADGDGRAVLTLAEEVWRAARREE----IFDSAGLQEIVQRRAPVYDKGQD 247

Query: 255 IWYDLISAVHKSIRGSDPDAALYWAARMISAGCDPLYIARRLLAIASEDVGNADPRGMQV 314
             Y+LISA+HKS+RGSDPDAALY+  RM  AG DPLYI RRL+ +A ED+G ADP+ + +
Sbjct: 248 GHYNLISALHKSVRGSDPDAALYYLCRMFDAGEDPLYIGRRLVRMAVEDIGLADPQALAI 307

Query: 315 ALAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAWKQALSDAHNLPEFEVPPHLR 374
             AA D +  +G  EGE A+A+A VYLA APKSNAVYTA+K A+  A        P H+ 
Sbjct: 308 CNAAKDAYDYLGSPEGELALAEACVYLATAPKSNAVYTAYKAAMRAAKENGSLLPPKHIL 367

Query: 375 NAPTRLMKDLGYGEEYRYAHDEPGAYAAGECYFPPEMSGTRYYQPTPRGLETKIAEKLAY 434
           NAPT+LMK  GYG+ YRY HDEP A+ +G+ YFP +M    +Y P  RG E +I ++L +
Sbjct: 368 NAPTKLMKGEGYGDGYRYDHDEPDAF-SGQDYFPEKMGRKTFYDPPERGFEREIRKRLEW 426