Pairwise Alignments

Query, 449 a.a., replication-associated recombination protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 443 a.a., recombination factor protein RarA (RefSeq) from Shewanella loihica PV-4

 Score =  579 bits (1492), Expect = e-170
 Identities = 295/449 (65%), Positives = 349/449 (77%), Gaps = 7/449 (1%)

Query: 1   MSNYSLDFSGDEDFRPLAARMRPQTVEQYIGQQHILGPGKPLRRALEAGHIHSMILWGPP 60
           MS+ S DF+   DFRPLAARMRP+T+ QYIGQ H+LG GKPLR+ALEAG  HSM+ WGPP
Sbjct: 1   MSSLSFDFA--PDFRPLAARMRPETLSQYIGQDHLLGEGKPLRQALEAGRAHSMMFWGPP 58

Query: 61  GTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKARENKLS-GRRTILFVDEVHRF 119
           GTGKTTLAE+ A+YANA VER+SAVTSGVKEIRAAIE A+    S G+RT+LFVDEVHRF
Sbjct: 59  GTGKTTLAELVAHYANAHVERISAVTSGVKEIRAAIEHAKSVAQSRGQRTLLFVDEVHRF 118

Query: 120 NKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLNQQEILQALHQAI 179
           NKSQQDAFLP IEDGTV FIGATTENPSFE+NNALLSRARVY +  L  +EI++ + QA+
Sbjct: 119 NKSQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSRARVYLIKRLQDEEIIKIVRQAL 178

Query: 180 ADTERGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMAREDDQGRKQIDLPLLA 239
            D ERGLGK      + V  +LA L +GDAR +LN +EL+ DM  +  +   Q    +L 
Sbjct: 179 EDGERGLGKRQLKMPNEVAGKLASLCDGDARKALNLIELMSDMLPDGGEFNAQ----MLI 234

Query: 240 EVAGEKVSRFDNKGDIWYDLISAVHKSIRGSDPDAALYWAARMISAGCDPLYIARRLLAI 299
           EVAG++++ FD  GD +YDLISAVHKSIRGS PDAALYW  RM+  GCDPLY+ARRLLAI
Sbjct: 235 EVAGQQLAGFDKNGDQYYDLISAVHKSIRGSAPDAALYWYCRMLEGGCDPLYVARRLLAI 294

Query: 300 ASEDVGNADPRGMQVALAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAWKQALS 359
           ASED+GNADP  M VA+ AW+CF RVGPAEGERAIAQA+VYLACAPKSNAVYTA+K A  
Sbjct: 295 ASEDIGNADPVAMSVAVNAWECFHRVGPAEGERAIAQAVVYLACAPKSNAVYTAFKAARQ 354

Query: 360 DAHNLPEFEVPPHLRNAPTRLMKDLGYGEEYRYAHDEPGAYAAGECYFPPEMSGTRYYQP 419
            A       VP HLRNAPT+LM D+G GE YRYAHDEP  YA+GECYFP +++GT++Y P
Sbjct: 355 LARETGSQPVPNHLRNAPTQLMADIGLGEGYRYAHDEPNHYASGECYFPEQLAGTQFYYP 414

Query: 420 TPRGLETKIAEKLAYLADLNAKSPQKRYE 448
           +  G E +I  KLA LA+++  S  KRYE
Sbjct: 415 SEHGFEKRIKTKLATLAEMDRASEVKRYE 443