Pairwise Alignments

Query, 449 a.a., replication-associated recombination protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 443 a.a., recombination factor protein RarA (RefSeq) from Shewanella sp. ANA-3

 Score =  570 bits (1468), Expect = e-167
 Identities = 293/445 (65%), Positives = 350/445 (78%), Gaps = 5/445 (1%)

Query: 5   SLDFSGDEDFRPLAARMRPQTVEQYIGQQHILGPGKPLRRALEAGHIHSMILWGPPGTGK 64
           SL F+   DFRPLAARMRP+T+ +YIGQ H+LG G+PLR+ALEAG  HSM+LWGPPGTGK
Sbjct: 3   SLSFNFAPDFRPLAARMRPRTIAEYIGQAHLLGEGQPLRQALEAGRAHSMMLWGPPGTGK 62

Query: 65  TTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKARENKLS-GRRTILFVDEVHRFNKSQ 123
           TTLAE+ A+Y+NA VER+SAVTSGVK+IRAAIE+A+    S G+RT+LFVDEVHRFNKSQ
Sbjct: 63  TTLAELIAHYSNAHVERISAVTSGVKDIRAAIEQAQAVAQSRGQRTLLFVDEVHRFNKSQ 122

Query: 124 QDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLNQQEILQALHQAIADTE 183
           QDAFLP IEDGTV FIGATTENPSFE+NNALLSRARVY +  L+Q EI+  + QA+ D E
Sbjct: 123 QDAFLPFIEDGTVIFIGATTENPSFEINNALLSRARVYLIKRLSQDEIVHIITQALTDPE 182

Query: 184 RGLGKVAAVFADNVLDRLAELVNGDARMSLNYLELLYDMAREDDQGRKQIDLPLLAEVAG 243
           RGLG+   V   +VL++LA+L +GDAR +LN LEL+ DM  +      +    +L +VAG
Sbjct: 183 RGLGQRQLVMPTDVLNKLAQLCDGDARKALNLLELMSDMVADGGSFTTE----MLVQVAG 238

Query: 244 EKVSRFDNKGDIWYDLISAVHKSIRGSDPDAALYWAARMISAGCDPLYIARRLLAIASED 303
            +V+ FD  GD +YDLISAVHKSIRGS PDAALYW  R++  G DPLY+ARRLLAIASED
Sbjct: 239 HQVAGFDKNGDQFYDLISAVHKSIRGSAPDAALYWFCRILEGGGDPLYVARRLLAIASED 298

Query: 304 VGNADPRGMQVALAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAWKQALSDAHN 363
           VGNADP  M VAL AWDCF RVGPAEGERAIAQAIVYLA APKSNAVYTA+K A + A  
Sbjct: 299 VGNADPNAMTVALNAWDCFHRVGPAEGERAIAQAIVYLASAPKSNAVYTAFKAARALARE 358

Query: 364 LPEFEVPPHLRNAPTRLMKDLGYGEEYRYAHDEPGAYAAGECYFPPEMSGTRYYQPTPRG 423
             +  VP HLRNAPT+LM ++G+G EYRYAHDEP AYA+GE YFP  +  +++Y PT RG
Sbjct: 359 TGQEAVPYHLRNAPTKLMAEMGFGAEYRYAHDEPNAYASGENYFPESLQESQFYFPTERG 418

Query: 424 LETKIAEKLAYLADLNAKSPQKRYE 448
            E +I +KLA LA L+  S +KRYE
Sbjct: 419 FEKRIKDKLAQLAQLDQASGRKRYE 443