Pairwise Alignments

Query, 323 a.a., tRNA dihydrouridine(16) synthase DusC from Vibrio cholerae E7946 ATCC 55056

Subject, 349 a.a., Dihydrouridine synthase TIM-barrel protein yjbN (NCBI) from Rhodospirillum rubrum S1H

 Score = 68.9 bits (167), Expect = 2e-16
 Identities = 87/311 (27%), Positives = 123/311 (39%), Gaps = 41/311 (13%)

Query: 2   RVILGPMEGVLDHLMRDMLTQINDYDFCVTEFVRVVNLLLPDHVFYRLCPELQQGSKTPS 61
           R+ + PM    D   R  L QI       TE +    LL  D   +            P 
Sbjct: 20  RLSVAPMMDWTDRHDRWFLRQITKRTLLYTEMITAQALLHADPGRFL--------DHHPD 71

Query: 62  GVPVKVQLLGQDPHWMAENAIRAAELGAYGIDLNFGCPAKMVNQSKGGAALLQHPELIYQ 121
             P+ +QL G DP  +AE    AA  G   I+LN GCP+  V+  + GA L+  P L+ +
Sbjct: 72  EHPLALQLGGSDPRALAEATRLAAPFGFAEINLNVGCPSDRVSSGRFGACLMADPALVAE 131

Query: 122 VVKACRDAVPAHIPVSAKIRLGWEDPEDCFEI---VDAVAQAKADELTVHARTKAGGYKA 178
            + A  +A  ++ PV+ K R+G +D +   ++   VD VA++    + VHAR KA     
Sbjct: 132 CLSAMAEA--SNAPVTIKHRIGIDDLDSYDQLVGFVDQVARSGIATIIVHAR-KAWLKGL 188

Query: 179 SEIKWHYIDQIRQ------KCSIP---LIANGEVWNYAD-----GQACIQTTGVDSLMVC 224
           S  +   I  +R       K   P   +I NG +          G        VD +M+ 
Sbjct: 189 SPKENREIPPLRHDVVHRLKADFPGLEVILNGGITTLTQALDHLGSGDPAAPAVDGVMIG 248

Query: 225 RGALNVPNL-----GNVVKHNHAAMPWHEVVDLLLRYTQ-FEVRGDKGKYYPNRIKQWF- 277
           R A   P +     G +      A   HEV   LL Y      RG+  K     I   F 
Sbjct: 249 RAAYETPYMLAQADGLIFGEATPAPSRHEVALALLPYLDAMTARGEPVKRLTRHILGLFH 308

Query: 278 ------AYLRH 282
                 AY RH
Sbjct: 309 GQPGARAYRRH 319