Pairwise Alignments

Query, 323 a.a., tRNA dihydrouridine(16) synthase DusC from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., NifR3/Smm1 family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  352 bits (904), Expect = e-102
 Identities = 175/315 (55%), Positives = 223/315 (70%), Gaps = 1/315 (0%)

Query: 1   MRVILGPMEGVLDHLMRDMLTQINDYDFCVTEFVRVVNLLLPDHVFYRLCPELQQGSKTP 60
           MRVIL PMEGV+D LMRD+L+ IN YD  VTEFVRVV+ LLP+ VF +LCPEL  G  TP
Sbjct: 1   MRVILAPMEGVVDDLMRDILSSINPYDLLVTEFVRVVDQLLPEKVFLKLCPELLSGGYTP 60

Query: 61  SGVPVKVQLLGQDPHWMAENAIRAAELGAYGIDLNFGCPAKMVNQSKGGAALLQHPELIY 120
           SG PV+VQLLGQ+P+ MAENA+RA ELG++G+D NFGCPAKMVN+S GGA LLQ+P  I+
Sbjct: 61  SGTPVRVQLLGQEPNCMAENAMRAIELGSHGVDANFGCPAKMVNRSNGGAVLLQYPNTIH 120

Query: 121 QVVKACRDAVPAHIPVSAKIRLGWEDPEDCFEIVDAVAQAKADELTVHARTKAGGYKASE 180
            +V+A R AVPA  PV+AKIRLG+ED     E   AV +A A EL +HAR+K  GYK   
Sbjct: 121 DIVRAMRQAVPAEHPVTAKIRLGYEDKSLFMENALAVYEAGATELAIHARSKVDGYKPPA 180

Query: 181 IKWHYIDQIRQKCSIPLIANGEVWNYADGQACIQTTGVDSLMVCRGALNVPNLGNVVKHN 240
             W YI ++R++  IP+IANGE+WN  D + C+Q TG DS+M+ RGA+++PNL + +K  
Sbjct: 181 Y-WEYITEVRERLPIPVIANGEIWNRDDAKRCMQVTGCDSIMIGRGAISLPNLADTIKTG 239

Query: 241 HAAMPWHEVVDLLLRYTQFEVRGDKGKYYPNRIKQWFAYLRHAYPQANELFGELRTLTQV 300
                W + + L+L YTQ E+ G K  YYP RIKQWF+YL   YP+A+ LF ELR     
Sbjct: 240 ATPYSWADTLQLMLSYTQRELSGRKSDYYPARIKQWFSYLNRQYPEADTLFRELRIYKTT 299

Query: 301 EPIVDQLHRYRDQLH 315
           E IV  L + +  L+
Sbjct: 300 EEIVRVLEQAQHHLN 314