Pairwise Alignments

Query, 323 a.a., tRNA dihydrouridine(16) synthase DusC from Vibrio cholerae E7946 ATCC 55056

Subject, 322 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  112 bits (281), Expect = 9e-30
 Identities = 78/240 (32%), Positives = 126/240 (52%), Gaps = 13/240 (5%)

Query: 2   RVILGPMEGVLDHLMRDMLTQINDYDFCVTEFVRV-VNLLLPDHVFYRLCPELQQGSKTP 60
           ++I+ PM GV D   R++  +       V+E +     +   D    R+    ++G ++ 
Sbjct: 11  QLIVAPMAGVTDQAFRNLCLRYGAA-LAVSEMLSSNPEVWDTDKSRQRMTHSGEEGIRS- 68

Query: 61  SGVPVKVQLLGQDPHWMAENAIRAAELGAYGIDLNFGCPAKMVNQSKGGAALLQHPELIY 120
                 VQ+ G DP  MA+ A    E GA+ ID+N GCPAK VN+   G+AL+Q+P L+ 
Sbjct: 69  ------VQIAGADPELMAQAAQFNVEQGAHIIDINMGCPAKKVNKKLAGSALMQNPPLVK 122

Query: 121 QVVKACRDAVPAHIPVSAKIRLGWE-DPEDCFEIVDAVAQAKADELTVHARTKAGGYKAS 179
            +++A   AV   +PV+ KIR GWE +  +  +I           L VH RT+   YK +
Sbjct: 123 DILQAVVAAV--DVPVTLKIRTGWEPEHRNGVQIAQIAEDCGIASLAVHGRTRQCMYKGN 180

Query: 180 EIKWHYIDQIRQKCSIPLIANGEVWNYADGQACIQTTGVDSLMVCRGALNVPNLGNVVKH 239
             ++  I  I+Q  SIP++ANG++ +    +  +  TGVD+LM+ RGA   P +   ++H
Sbjct: 181 -AEYDTIKAIKQNVSIPVVANGDIDSPEKARFVLDYTGVDALMIGRGAQGRPWIFREIQH 239