Pairwise Alignments

Query, 323 a.a., tRNA dihydrouridine(16) synthase DusC from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., putative TIM-barrel enzyme, possible dehydrogenase, contains a highly conserved dihydrouridine synthase domain (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  104 bits (260), Expect = 3e-27
 Identities = 75/240 (31%), Positives = 116/240 (48%), Gaps = 13/240 (5%)

Query: 3   VILGPMEGVLDHLMRDMLTQINDYDFCVTEFVRVVNLLLPDHVFYRLCPELQQGSKTPSG 62
           ++L PME V D   R M  +    D   TEFV        D +   +    Q+ S +   
Sbjct: 13  ILLAPMEDVTDPAFRLMCKKFGA-DMVYTEFVS------SDALIRAVSKTAQKLSISDEE 65

Query: 63  VPVKVQLLGQDPHWMAENAIRAAELGAYGIDLNFGCPAKMVNQSKGGAALLQHPELIYQV 122
            PV +Q+ G+D   M E A    +     +D+NFGCP K V     GA +LQ+   + ++
Sbjct: 66  RPVAIQIYGKDTETMVEAAKIVEQAQPDILDINFGCPVKRVAGKGAGAGMLQNIPKMLEI 125

Query: 123 VKACRDAVPAHIPVSAKIRLGWE-DPEDCFEIVDAVAQAKADELTVHARTKAGGYKASEI 181
            +A  DAV   IPV+ K RLGW+ + +   ++ + +       LT+H RT+A  Y   E 
Sbjct: 126 TRAVVDAV--KIPVTVKTRLGWDANNKIIVDLAEQLQDCGIAALTIHGRTRAQMY-TGEA 182

Query: 182 KWHYIDQIR--QKCSIPLIANGEVWNYADGQACIQTTGVDSLMVCRGALNVPNLGNVVKH 239
            W  I +++  Q+  IP+I NG+V      + C    GVD++M+ R +   P +   VKH
Sbjct: 183 DWTLIGEVKNNQRMHIPIIGNGDVTTPQRCKECFDRYGVDAVMIGRASFGRPWIFKEVKH 242