Pairwise Alignments

Query, 327 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 312 a.a., inner-membrane translocator (NCBI) from Rhodospirillum rubrum S1H

 Score =  308 bits (788), Expect = 1e-88
 Identities = 164/296 (55%), Positives = 221/296 (74%), Gaps = 2/296 (0%)

Query: 14  MSAFAFFGALELGLLYGLVALGVYLTFRVLDFPDLSVDGSFPMGAAVAATAIVAGINPWV 73
           MS  AF GA+E GL++GLVALGV+L+FR+LDFPDL+VDGSFP+G AV+AT IV+G +P++
Sbjct: 1   MSLIAFLGAVESGLIFGLVALGVFLSFRILDFPDLTVDGSFPLGGAVSATLIVSGWDPFL 60

Query: 74  ATGLAILAGAATGWVTAFLSVRCGILHLLASILTMIAAFSINIRIMGRPNLALLGEDTIL 133
           AT +AI+AGA  G VTA L+V+  ILHLLASILTMIA +S+N+RIMGRPN+ALL E T+ 
Sbjct: 61  ATAIAIVAGAMAGAVTALLNVKLRILHLLASILTMIALYSVNLRIMGRPNVALLMEPTVF 120

Query: 134 TPFEALGDP--VLIRPLVVAVLVVISALLVIRLLNSDFGLGLRATGVNARMVAAQGASTA 191
           +  EA G P    + P V+ V++V++ +     + S  GL +RATG NARM  AQG STA
Sbjct: 121 SLVEAPGMPSRSWMIPAVLLVVIVLALIAFNLFMASRAGLAMRATGANARMAGAQGVSTA 180

Query: 192 FYTYFCLALSNGFVGFAGALFAQTNSFADVTSGVGTIVVGLAAVILGQTLIPGRKIWVAV 251
                 +A+SNG V  AGALFAQ+   ADVT GVG IVVGLA+VI G+ ++P R + +A 
Sbjct: 181 GAIVLGMAMSNGLVALAGALFAQSQGGADVTMGVGVIVVGLASVIGGEAVMPTRTVLLAS 240

Query: 252 VAVIVGSVLYRLAVAFALSSGMFGLQASDLNLVTAVLVALALIMPKIKRNLKSKKR 307
           +A ++G+++YRLAVA AL++   GLQA DLNL+TAVLVA+A+++P  + +L+   R
Sbjct: 241 IACVIGAIMYRLAVALALNADSIGLQAQDLNLITAVLVAVAMVLPGSRASLRRNFR 296