Pairwise Alignments

Query, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

Subject, 375 a.a., ABC transporter for D-Raffinose, permease component 1 (from data) from Sinorhizobium meliloti 1021

 Score =  177 bits (450), Expect = 3e-49
 Identities = 96/225 (42%), Positives = 135/225 (60%), Gaps = 7/225 (3%)

Query: 80  HWFGTDALGRDLFVRTLVGGRISLMVGIMGALVAVLIGTLYGAASGFIGGRTDRVMMRIL 139
           H  GTD  GRD+  R L G RISLM+ +    +  ++GT  G  SG+ GGR D  + R +
Sbjct: 150 HLLGTDKFGRDVLSRILYGSRISLMIALTVVFIVTVVGTTVGMVSGYFGGRFDAWVQRFV 209

Query: 140 EILYAIPFMFLVIVLVTFFG----RNIVLIFVAI--GAIAWLDMARIVRGQTLSLRSKEF 193
           E++ A P + L + L +        N+ L FV I   A+ W  M+R VRG+TL+L   E+
Sbjct: 210 ELVLAFPQLPLYLALASLIPVTAPTNVFLAFVIIVMSALGWAQMSREVRGKTLALARIEY 269

Query: 194 IEAAHVCGVSKWNIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSFLGLGVQEPMTSWG 253
           + AA   G +   II +HI PNV+  V V  TL IP ++L ESFL FLG  V+ P+ SWG
Sbjct: 270 VRAAIAIGATDRRIIFQHIFPNVMSHVIVAVTLAIPHVVLLESFLGFLGFAVKPPLISWG 329

Query: 254 ALLQEGANTMEVAIWQ-LLFPAAFMVLTLFCFNYVGDGLRDALDP 297
            +LQ+ AN   +  +  +L P AF+++T+F FN +GDGLRDA+DP
Sbjct: 330 LMLQDTANYSAIGSYPWILSPVAFVLVTVFAFNALGDGLRDAIDP 374