Pairwise Alignments

Query, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

Subject, 281 a.a., ABC transporter permease from Rahnella sp. WP5

 Score =  166 bits (420), Expect = 6e-46
 Identities = 94/278 (33%), Positives = 153/278 (55%), Gaps = 31/278 (11%)

Query: 24  SLWQDARIRFMRNKAAMVSLFVLMLITLAVVFLPMFSAYSYEDTDWYAMHAGPSAEHWFG 83
           S W+ A     +N+ AM  L +L+++ +  +  P +S +  + TD   ++  P+AEHW G
Sbjct: 26  SPWRQAWRALRQNRLAMFCLVLLLVMAVWCIVGPYYSPWRDDATDALMINKAPNAEHWLG 85

Query: 84  TDALGRDLFVRTLVGGRISLMVGIMGALVAVLIGTLYGAASGFIGGRTDRVMMRILEILY 143
           TD LGRD++ R L+ GRISL++G++  L++V +G L GA    +    D           
Sbjct: 86  TDFLGRDVYTRLLLAGRISLIIGMLTMLLSVTLGYLMGAMLSELDFSPDS---------- 135

Query: 144 AIPFMFLVIVLVTFFGRNIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVCGVS 203
                             + ++ V +  + W  +AR+VRGQ LSLR ++F+ A  V G+S
Sbjct: 136 -----------------RVYMVIVMLSLLEWPKLARLVRGQILSLRERDFMLATQVLGLS 178

Query: 204 KWNIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSFLGLGVQEPMTSWGALLQEGANTM 263
               +  H++PN + I+ V +T+ + + IL+ES LS+LGLGV  P  SWG ++ + AN++
Sbjct: 179 SRRRLFGHLLPNTVPILVVMATMAVANAILSESALSYLGLGVVPPTPSWGNMM-DAANSL 237

Query: 264 ---EVAIWQLLFPAAFMVLTLFCFNYVGDGLRDALDPK 298
              +   W  + P   + +T+   N +GDGLRDALDPK
Sbjct: 238 IDFQRRPWLWMPPGVAIFITVIAINVLGDGLRDALDPK 275