Pairwise Alignments

Query, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

Subject, 371 a.a., microcin C transport system permease protein from Paraburkholderia graminis OAS925

 Score =  172 bits (436), Expect = 1e-47
 Identities = 92/242 (38%), Positives = 143/242 (59%), Gaps = 4/242 (1%)

Query: 62  YSYEDTDWYAMH---AGPSAEHWFGTDALGRDLFVRTLVGGRISLMVGIMGALVAVLIGT 118
           + Y+  D++A H   A P+A +W GTD  GRD+  R L G R+S+++ +   +  VLIG 
Sbjct: 122 FRYDTIDYFAAHPYPAPPTASNWLGTDQYGRDVLARLLYGFRLSVLMALALTVSGVLIGV 181

Query: 119 LYGAASGFIGGRTDRVMMRILEILYAIPFMFLVIVLVTFFGRNIVLIFVAIGAIAWLDMA 178
             GA  GF GGRTD +  R++EI  ++P ++L+I+  + F   + L+F+ +    WL ++
Sbjct: 182 AAGAIQGFYGGRTDLIGQRLIEIWSSMPDLYLLIIFASIFEPTLWLLFILLSMFGWLVLS 241

Query: 179 RIVRGQTLSLRSKEFIEAAHVCGVSKWNIITRHIVPNVLGIVAVYSTLLIPSMILTESFL 238
             VR + L  RS ++++AA   G+S   II RH++PN L  V  +    + + IL+ + L
Sbjct: 242 DYVRAEFLRNRSLDYVKAARTMGLSNSQIIWRHVLPNSLTPVITFLPFRMSAAILSLTSL 301

Query: 239 SFLGLGVQEPMTSWGALLQEGANTMEVAIWQLLFPAAFMVLTLFCFNYVGDGLRDALDPK 298
            FLGLGV  P  S G LLQEG N ++ A W  +   A +V+TL    ++GD LR+ALD +
Sbjct: 302 DFLGLGVPPPTPSLGELLQEGKNNLD-AWWISVSAFAALVVTLLLLTFIGDALRNALDTR 360

Query: 299 DR 300
            R
Sbjct: 361 SR 362