Pairwise Alignments

Query, 300 a.a., oligopeptide ABC transporter permease OppC from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., ABC transporter permease from Bifidobacterium breve UCC2003

 Score =  163 bits (413), Expect = 4e-45
 Identities = 91/279 (32%), Positives = 148/279 (53%), Gaps = 2/279 (0%)

Query: 24  SLWQDARIRFMRNKAAMVSLFVLMLITLAVVFLPMFSAYSYEDTDWYAMHAGPSAEHWFG 83
           S+W DA     RN   ++S  +++ I +  +   +F+       D     +  SA H FG
Sbjct: 54  SMWADAWRTLRRNPLFIISGLLILFIIVVAIAPGLFTKQDPNACDLGNSLSPASAGHPFG 113

Query: 84  TDALGRDLFVRTLVGGRISLMVGIMGALVAVLIGTLYGAASGFIGGRTDRVMMRILEILY 143
            D  G D++ R + G R SL VG++  L+ V++GTL GA +GF GG  D V+ RI +I +
Sbjct: 114 YDLQGCDVYTRVIYGTRTSLSVGVLSTLLVVIVGTLIGAVAGFFGGWVDAVLSRINDIFF 173

Query: 144 AIPFMFLVIVLVTFF--GRNIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVCG 201
           A+P +   IV++  F   ++I  I + +    W+ + RI R   L  ++ EF  A+   G
Sbjct: 174 ALPMLLGAIVVLQMFKTSKSIWKIVLVLTLFGWVGVCRIARSAVLESKNLEFNTASTALG 233

Query: 202 VSKWNIITRHIVPNVLGIVAVYSTLLIPSMILTESFLSFLGLGVQEPMTSWGALLQEGAN 261
            +    + RHI+PN L  + V +T  + S I+ E+ LSFLG+G+     SWG  +     
Sbjct: 234 STPARNLFRHILPNSLAPIIVIATTSLASYIVAEATLSFLGVGLPTTTVSWGGDISSAQT 293

Query: 262 TMEVAIWQLLFPAAFMVLTLFCFNYVGDGLRDALDPKDR 300
            ++     L +P+A + +T+  F  +GD ++DALDPK R
Sbjct: 294 NLQTDPMVLFYPSAALAITVLAFIMMGDAVKDALDPKSR 332