Pairwise Alignments

Query, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) from Pseudomonas fluorescens FW300-N2E2

 Score =  199 bits (505), Expect = 1e-55
 Identities = 117/335 (34%), Positives = 181/335 (54%), Gaps = 30/335 (8%)

Query: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNPFS---SERPLPPEVMANINAKYGLDK 57
           M  FIA+R+   IPT   +  ++F L+R  PG+P      ER + PE+ A    + GL+K
Sbjct: 1   MFSFIARRLGLLIPTFFGITLLTFALIRMIPGDPVEVMMGERRVDPEMHAQAMERLGLNK 60

Query: 58  PVSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGT 117
           P+  QYL Y+  + QGD G S + ++    E  +S  P ++++ +AA +F  I+G+  G 
Sbjct: 61  PLYAQYLDYIGKLAQGDLGESLRTRESVWTEF-SSLFPATLELSMAALLFAGILGLLAGV 119

Query: 118 IAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQD--------- 168
           IAALK+ +  D+ +M  ++ G  MP F    +LI  F++     P  G  D         
Sbjct: 120 IAALKRGSLFDHGVMGVSLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIEPKT 179

Query: 169 -------------GGF----EYMALPVLGMSLLYVATFARITRGSMIETLNSNFIRTARA 211
                        G F     ++ LP + +  + +A  AR+TR SM+E L  ++IRTA+A
Sbjct: 180 GFMLIDTLLADEPGAFLDALHHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTAKA 239

Query: 212 KGLSYGYIVVKHALKPALLPVVSYMGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRD 271
           KGLS   +V  H L+ AL+PV++ +G     ++ G+V+ ETIF  PGIGK  + A   RD
Sbjct: 240 KGLSPSRVVFVHGLRNALIPVLTVVGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGARD 299

Query: 272 YSLVMGVTILIGFLFILFNAIVDILLAYIDPKIRY 306
           Y +V    +LI  L IL N +VDIL  + +P+IR+
Sbjct: 300 YPVVQNGILLIACLVILVNFVVDILYGFANPRIRH 334