Pairwise Alignments

Query, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

Subject, 305 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  197 bits (502), Expect = 2e-55
 Identities = 111/311 (35%), Positives = 181/311 (58%), Gaps = 14/311 (4%)

Query: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRY------APGNPFSSERPLPPEVMANINAKYG 54
           ML F+ +R+  AI   + +  ISF L+        A G P ++      E +  I  +YG
Sbjct: 1   MLGFLLRRLGIAICVAITVSVISFSLLHLSGDLATAIGGPEATS-----EQIEQIRVQYG 55

Query: 55  LDKPVSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVT 114
           LDKP+  QY  +L ++++ D G SF +++   N L+AS LP+++ +G  A    +++ + 
Sbjct: 56  LDKPLPTQYFNWLGDLLRLDLGDSFFFQESVYN-LVASRLPITLGLGAMALGIALLVAIP 114

Query: 115 VGTIAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQDGGFEYM 174
           +G +AA+K++TW+D   +S A+LG  MPSF  A +LI +FA+     P  G  +    + 
Sbjct: 115 LGVLAAVKRDTWVDRLALSIAVLGQAMPSFWFALMLIVVFAVTLKWLPVSG--NSTLLHF 172

Query: 175 ALPVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALLPVVS 234
            +P + +         R+TR  M++ L+S++IRTARAKGL    ++ KHAL+ AL+PVV+
Sbjct: 173 VMPAIALGYYATPAIMRLTRAGMLDVLSSDYIRTARAKGLRPARVLFKHALRNALIPVVA 232

Query: 235 YMGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVD 294
                F  ++ GSVVIET+F L GIG+L  +A    D+ +V  V +LI  ++I+   + D
Sbjct: 233 LAAVEFGFMLGGSVVIETVFSLQGIGQLAWDAIARDDFPVVQAVVLLIAVIYIILTLLAD 292

Query: 295 ILLAYIDPKIR 305
           +L A +DP+IR
Sbjct: 293 VLNALLDPRIR 303