Pairwise Alignments

Query, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., Binding-protein-dependent transport systems inner membrane component from Pseudomonas syringae pv. syringae B728a

 Score =  200 bits (508), Expect = 4e-56
 Identities = 118/335 (35%), Positives = 179/335 (53%), Gaps = 30/335 (8%)

Query: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNPFS---SERPLPPEVMANINAKYGLDK 57
           M  FIA+R+   IPT   +  ++F L+R  PG+P      ER + PE+ A    + GL+K
Sbjct: 1   MFSFIARRVGLLIPTFFGITLLTFALIRLIPGDPVEVMMGERRVDPEMHAQAMERLGLNK 60

Query: 58  PVSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGT 117
           P+  QY+ Y+  + QGD G S + +    +E   S  P ++++ LAA +F  I+G+  G 
Sbjct: 61  PLYAQYIDYIGKLAQGDLGESLRTRTSVWSEF-TSLFPATLELSLAALIFAGILGLLAGV 119

Query: 118 IAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQD--------- 168
           IAALK+ +  D+ +M  ++ G  MP F    +LI  F++     P  G  D         
Sbjct: 120 IAALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVTLGWTPVSGRIDLLYDIPPVT 179

Query: 169 -------------GGF----EYMALPVLGMSLLYVATFARITRGSMIETLNSNFIRTARA 211
                        G F     +M LP + +  + +A  AR+TR SM+E L  +++RTARA
Sbjct: 180 GFMLIDTLLSDEQGSFLDALHHMILPAIVLGTIPLAVIARMTRSSMLEVLREDYVRTARA 239

Query: 212 KGLSYGYIVVKHALKPALLPVVSYMGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRD 271
           KGLS   +V  H L+ AL+PV++  G     ++ G+V+ ETIF  PGIGK  + A   RD
Sbjct: 240 KGLSPARVVFVHGLRNALIPVLTVFGLQIGTLLAGAVLTETIFSWPGIGKWLIEAIGARD 299

Query: 272 YSLVMGVTILIGFLFILFNAIVDILLAYIDPKIRY 306
           Y +V    +LI  L IL N +VDIL  + +P+IR+
Sbjct: 300 YPVVQNGILLIACLVILVNFVVDILYGFANPRIRH 334