Pairwise Alignments

Query, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., Binding-protein-dependent transport systems inner membrane component from Pseudomonas syringae pv. syringae B728a

 Score =  185 bits (470), Expect = 1e-51
 Identities = 102/308 (33%), Positives = 176/308 (57%), Gaps = 8/308 (2%)

Query: 3   KFIAKRIFEAIPTMLVLITISFFLMRYAPGNPFSS--ERPLPPEVMANINAKYGLDKPVS 60
           +FI +R  + +P +  +  ++F L+R  PG+P          P+ +ANI A+YGLD+P+ 
Sbjct: 7   RFILQRPLQLLPVLFGISLVTFILVRSIPGDPARMLLGSRSTPQALANIRAQYGLDEPLW 66

Query: 61  EQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGTIAA 120
            QY+ ++ N+VQGD G S  YK   V +LI++ +  +V +   + +  +++ V + T+AA
Sbjct: 67  TQYVYFMKNLVQGDMGKSLLYK-IDVLKLISTRIEPTVFLVSGSVLLALLIAVPLATLAA 125

Query: 121 LKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGG----WQDGGFEYMAL 176
             + +W D  I      G+ MP+F L  +LI +F++Q   FP  G    W D    ++ L
Sbjct: 126 RNKGSWSDNLIRVFTTTGLGMPAFWLGIMLILLFSVQLGWFPVSGYGSDWLDKA-HHLVL 184

Query: 177 PVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALLPVVSYM 236
           P L ++L   A   R  R SM+  L ++ +  ARA+GLS G +  +H L  +L+P ++ +
Sbjct: 185 PCLTIALALSAVLIRNLRASMLVELQADHVTAARARGLSEGALFRRHVLPNSLVPSINLL 244

Query: 237 GPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDIL 296
                 +I+G+VVIE++F +PGIG+L V   F+RDY +V GV +++    ++ N + D+ 
Sbjct: 245 AVNIGWLISGTVVIESLFAIPGIGQLLVRGIFSRDYMVVQGVAMVLACATVIVNFLADVA 304

Query: 297 LAYIDPKI 304
              IDP++
Sbjct: 305 TVAIDPRV 312