Pairwise Alignments

Query, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

Subject, 314 a.a., Binding-protein-dependent transport systems inner membrane component from Pseudomonas syringae pv. syringae B728a

 Score =  208 bits (529), Expect = 1e-58
 Identities = 109/315 (34%), Positives = 186/315 (59%), Gaps = 13/315 (4%)

Query: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNPF----SSERPLPPEVMANINAKYGLD 56
           ML FI +R+  +IPT++++    F L +  PG+P       ER   P VM  +  KY LD
Sbjct: 1   MLMFILRRLLSSIPTLILVSLFVFTLQKLLPGDPVLAMAGEERD--PAVMEYLRDKYRLD 58

Query: 57  KPVSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVG 116
            P+  QYL ++ N++ GD G S +  +  V  L+AS LPV++++ + A +  +++G+  G
Sbjct: 59  DPIPLQYLNWVGNVLTGDLGTSLR-TEQAVTTLLASKLPVTIELAVLALLIALLIGIPTG 117

Query: 117 TIAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQDGGFEY--- 173
            I+A+++ T +DY     A+ G+ +P F L  +LI +FA++    PA G+   G ++   
Sbjct: 118 IISAVRKGTAVDYGANVVALSGISIPHFWLGILLIMVFAVKLQWLPASGFVPMGEDFGQN 177

Query: 174 ---MALPVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALL 230
              + LP   +         R TR +M+E L ++++RTARAKGL    +++KHAL+ AL+
Sbjct: 178 LKTLILPAFVLGAGLSGILMRHTRSAMLEVLRTDYVRTARAKGLFPRTVILKHALRNALM 237

Query: 231 PVVSYMGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFN 290
           P+V+     F  ++ G+V+ E +F +PG GK+ V+A FNRDY++V GV + +   F++ N
Sbjct: 238 PIVTLTTLLFGELLGGAVLTEQVFSIPGFGKMIVDAVFNRDYAVVQGVVLCVAIGFLMLN 297

Query: 291 AIVDILLAYIDPKIR 305
            + D+L   I+P++R
Sbjct: 298 LLADVLYRLINPRLR 312