Pairwise Alignments

Query, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., peptide ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  202 bits (514), Expect = 9e-57
 Identities = 115/335 (34%), Positives = 188/335 (56%), Gaps = 30/335 (8%)

Query: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNP---FSSERPLPPEVMANINAKYGLDK 57
           M +F+  R+   IPT + +  I+F  +R  PG+P    S ER + PE  A I+ + G D+
Sbjct: 1   MFRFLLGRLAVLIPTFIGVSIIAFSFIRLLPGDPVALLSGERVMSPERHAEISHQLGFDR 60

Query: 58  PVSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGT 117
           P+  QYL YL  ++QGDFG S   K   +++ +    P +V++ L A +F V++G+  G 
Sbjct: 61  PIVMQYLDYLWGVLQGDFGTSIVTKKPVIDQFM-ELFPATVELSLCAIIFAVVVGIPAGV 119

Query: 118 IAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGG------------ 165
           +AA+K+ +  D  IM TA++G  MP F    +LI + +      P  G            
Sbjct: 120 VAAVKRGSIFDQIIMGTALIGFSMPIFWWGLLLIIVVSGILQWTPVSGRISLMFFFPSVT 179

Query: 166 ----------WQDGGFE----YMALPVLGMSLLYVATFARITRGSMIETLNSNFIRTARA 211
                      Q+G F+    ++ LP + +  + +A  AR TR +M+E L+ +++RTARA
Sbjct: 180 GFMLVDSLLSGQEGAFQSAFNHLILPTIVLGTIPLAVIARQTRSAMLEVLSEDYVRTARA 239

Query: 212 KGLSYGYIVVKHALKPALLPVVSYMGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRD 271
           KGLS   +V  HAL+ A++PVV+ +G     ++ G+++ ETIF  PGIGK  V++ F RD
Sbjct: 240 KGLSTFRVVGIHALRNAMIPVVTTIGLQIGVMLAGAILTETIFSWPGIGKWMVDSVFRRD 299

Query: 272 YSLVMGVTILIGFLFILFNAIVDILLAYIDPKIRY 306
           Y+++ G  ++I  + +L N  VD+L   I+P+IR+
Sbjct: 300 YAVIQGGLLIIAAVIMLVNLAVDLLYGLINPRIRH 334