Pairwise Alignments

Query, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

Subject, 304 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  183 bits (464), Expect = 5e-51
 Identities = 102/311 (32%), Positives = 170/311 (54%), Gaps = 12/311 (3%)

Query: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNPFSSERPLPP-----EVMANINAKYGL 55
           ML +I +R + ++ +++ L+T+ FFL R   G+P +   PL       +  A +N   GL
Sbjct: 1   MLGYIGRRAYHSVISVIGLLTLVFFLTRLT-GDPSALYLPLDSSLEARQAFARLN---GL 56

Query: 56  DKPVSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTV 115
           D+P+  Q+  YL N++  DFG S +     + E+   A P ++K+ L A     ++ + V
Sbjct: 57  DQPIYVQFFQYLQNLMSLDFGQSLRQNRSAI-EVALEAFPATLKLALVAMSLATVLAIVV 115

Query: 116 GTIAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQDGGFEYMA 175
           G +AA +  +  D      ++ G   P F +A V I +FA+   + P  G   G   +  
Sbjct: 116 GALAAARPGSLFDRIAGLVSLAGASTPDFWIAIVGILVFAVGLGILPTSG--TGTALHWI 173

Query: 176 LPVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALLPVVSY 235
           +P++ + L       ++ RG+MI  L S FI+TA AKG+    I+  HAL+ +LLPV++ 
Sbjct: 174 MPIVVLMLRPFGLLVQVVRGTMISALASPFIKTAHAKGMKRRKIIFGHALRNSLLPVITV 233

Query: 236 MGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDI 295
            G    G+I G+VV+ETIFG PGIGKL +++   RD+++V    ++      + N  +D+
Sbjct: 234 AGDLATGLINGAVVVETIFGWPGIGKLMIDSIIQRDFAVVQSTILVTAIAIFIVNIAIDL 293

Query: 296 LLAYIDPKIRY 306
           L A +DP+IRY
Sbjct: 294 LYAVLDPRIRY 304