Pairwise Alignments

Query, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  195 bits (495), Expect = 1e-54
 Identities = 113/335 (33%), Positives = 186/335 (55%), Gaps = 30/335 (8%)

Query: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNPF---SSERPLPPEVMANINAKYGLDK 57
           M+ FI +R+   IP  + +  ++F L+   PG+P    + ER + P   A +  + GLD+
Sbjct: 1   MISFILRRVVLIIPAFIGVTLLAFALIHLIPGDPILVMAGERGVSPARHAMLMTQLGLDR 60

Query: 58  PVSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGT 117
           P+ EQYLTYL   +QGD G S   +   + E   +  P ++++G+ A VF V++G+  G 
Sbjct: 61  PLWEQYLTYLGKALQGDLGNSIVTRQPVIEEF-KTLFPATIELGVFAMVFAVLIGIPAGM 119

Query: 118 IAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGG------WQD--- 168
           +AA+K+ T +D+ +M  ++ G  MP F    +LI + +      P  G      W D   
Sbjct: 120 LAAVKRGTSLDHGVMVVSLTGYSMPIFWWGLLLIMLVSGILGWTPVSGRIDSIMWIDTVT 179

Query: 169 -------------GGF----EYMALPVLGMSLLYVATFARITRGSMIETLNSNFIRTARA 211
                        G F     ++ LP + +  + +A  AR+TR +M+E L  +++RTARA
Sbjct: 180 GFMLIDSLLSDEPGAFLSAVHHLILPAIVVGTIPLAVIARMTRSAMLEVLREDYVRTARA 239

Query: 212 KGLSYGYIVVKHALKPALLPVVSYMGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRD 271
           KG+S G +V+ HAL+ AL+PV++ +G     ++ G+++ ETIF  PG+GK  V++   RD
Sbjct: 240 KGVSPGRVVMVHALRNALIPVITVIGLQTGVLLAGAILTETIFAWPGVGKWLVDSINRRD 299

Query: 272 YSLVMGVTILIGFLFILFNAIVDILLAYIDPKIRY 306
           Y  V G  +LI  + IL N +VD+L   I+P+IR+
Sbjct: 300 YPAVQGGILLISTVVILVNLLVDVLYGVINPRIRH 334