Pairwise Alignments

Query, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

Subject, 314 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  179 bits (453), Expect = 1e-49
 Identities = 102/310 (32%), Positives = 175/310 (56%), Gaps = 8/310 (2%)

Query: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNP---FSSERPLPPEV--MANINAKYGL 55
           M+ F+ KR+   +P +L    + F ++R  P +P   +     +PP V  +A    + GL
Sbjct: 1   MVSFVLKRLALLVPMLLGASLVIFLMLRLGPSDPAMDYLRLSRIPPTVQALAETRQRLGL 60

Query: 56  DKPVSEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTV 115
           D+P++ QY  +L   +  DFG S+      + +L+   LP ++ +   A   T+ + + +
Sbjct: 61  DQPLAVQYWVWLNKALHLDFGVSYATGRPVLPDLL-HYLPATLHLAGVALALTLGLSIPL 119

Query: 116 GTIAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQDGGFEYMA 175
           G  AA +++   D  +   A LGV MP+F L  +L+ +F+++    PA G   GG E+M 
Sbjct: 120 GMWAARRRDALPDQIVRGVAFLGVSMPNFWLGFLLVLVFSVELGWLPAMG--RGGAEHMI 177

Query: 176 LPVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALLPVVSY 235
           +P + ++ + ++  AR+ R SM+E      +  AR +GLS   +   H L+ ALLP+++ 
Sbjct: 178 MPAVAIAFMSLSINARLLRASMLEVSGQRHVYYARLRGLSAAKVERAHILRNALLPIITA 237

Query: 236 MGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDI 295
            G     +I G++VIE+IFG PG+G+  V+A FNRDY ++   T+L+  +F+L N IVDI
Sbjct: 238 TGMHVGELIGGTLVIESIFGWPGVGRFAVSAIFNRDYPVIQCFTLLMVLIFVLCNLIVDI 297

Query: 296 LLAYIDPKIR 305
           + A+ DP+IR
Sbjct: 298 VYAWADPRIR 307