Pairwise Alignments

Query, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

Subject, 326 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  190 bits (482), Expect = 4e-53
 Identities = 110/318 (34%), Positives = 182/318 (57%), Gaps = 17/318 (5%)

Query: 4   FIAKRIFEAIPTMLVLITISFFLMRYAPGNPFSSERPL----PPEVMANINAKYGLDKPV 59
           F  +R+  +IP++L+++   F L++ APG+   +          +++  +   YGLD PV
Sbjct: 6   FALRRLATSIPSLLIILVGVFLLLQLAPGDTVDALLAQMGGGDAQIIETLRHFYGLDAPV 65

Query: 60  SEQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGTIA 119
           + Q   YL  +VQ D G S  Y    + ++I   LPV++ +  A+ V  V  GV +G +A
Sbjct: 66  AVQLGRYLLRLVQFDLGYSAIYGKPVI-DVIVERLPVTLLLMGASLVVAVSGGVALGVLA 124

Query: 120 ALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQDGGFEY------ 173
           A + N W D  I +  ++    PSF L  + + +FA++    P GG+++ G  Y      
Sbjct: 125 ARRVNKWPDTLISTLGLVFYATPSFWLGLMAVVVFAVKLGWLPPGGFEEVGAGYQGLTRA 184

Query: 174 ------MALPVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKP 227
                 MALP + +SL+++AT+ RI R SM+E  + +F+RTARAKG+    IV  H L+ 
Sbjct: 185 LDIARHMALPTITLSLIFLATYLRIMRASMLEVSSLDFVRTARAKGVDETKIVTHHVLRN 244

Query: 228 ALLPVVSYMGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFI 287
           ALLP+++ +G     ++ GSVV+E++F LPG+G+L   +   RD + ++G+ +L   L I
Sbjct: 245 ALLPMLTLIGLNASTMLGGSVVVESVFTLPGLGRLAYESVVQRDLNTLLGIVLLSAVLVI 304

Query: 288 LFNAIVDILLAYIDPKIR 305
           + N IVD+L A +DP+IR
Sbjct: 305 VVNFIVDLLYARLDPRIR 322