Pairwise Alignments

Query, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  208 bits (530), Expect = 1e-58
 Identities = 106/311 (34%), Positives = 185/311 (59%), Gaps = 9/311 (2%)

Query: 4   FIAKRIFEAIPTMLVLITISFFLMRYAPGNPFSS--ERPLPPEVMANINAKYGLDKPVSE 61
           F+ +R+   +P ++V+  I F ++R APG+P ++        E +A + A  GLD P+  
Sbjct: 4   FLLRRVLATLPVLVVVALIVFLMLRLAPGDPAAAIVGATGTAEDIARVRADLGLDDPMPV 63

Query: 62  QYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGTIAAL 121
           Q++ +   ++QGD G SF  K  TV  LIA  +  ++ +     V T+++ V +G IAA 
Sbjct: 64  QFVRWAGQMLQGDLGESFFMKQ-TVVALIAQRIEPTLSLSAMTLVMTILIAVPLGVIAAW 122

Query: 122 KQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQDGG------FEYMA 175
           +   W+D  +M  ++LG  +P+FV+   LI++FA+ + + P  G+   G        ++ 
Sbjct: 123 RHGGWLDRALMGFSVLGFSIPAFVIGYCLIWLFAMHWQMLPVQGYVRFGDDPSRWLRHLI 182

Query: 176 LPVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALLPVVSY 235
           +P + +S++YVA  AR+TR ++ E +  ++IRTARAKG+S   ++++HAL  A +P+V+ 
Sbjct: 183 MPAVTLSIIYVALIARVTRAAVAEAMTEDYIRTARAKGISEVRVLMRHALANAAVPIVTV 242

Query: 236 MGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDI 295
           +G     +I G VV E +F +PG+G+L V+A  +RD+ L+ G+T+    L++L N  VD+
Sbjct: 243 IGIGVAMLIGGVVVTEAVFAIPGLGQLTVDAVLSRDFPLIQGITLFFSVLYMLINLAVDL 302

Query: 296 LLAYIDPKIRY 306
                DP+IRY
Sbjct: 303 SYLLFDPRIRY 313