Pairwise Alignments

Query, 306 a.a., oligopeptide ABC transporter permease OppB from Vibrio cholerae E7946 ATCC 55056

Subject, 308 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  350 bits (899), Expect = e-101
 Identities = 166/305 (54%), Positives = 221/305 (72%)

Query: 1   MLKFIAKRIFEAIPTMLVLITISFFLMRYAPGNPFSSERPLPPEVMANINAKYGLDKPVS 60
           ML+FI KR+  A+PT+LV+IT++FF+MR APG PF SER LPPE+  NI A Y LDKP+ 
Sbjct: 1   MLRFILKRLMIAVPTLLVIITVAFFMMRIAPGGPFDSERALPPEIEKNILAAYNLDKPLI 60

Query: 61  EQYLTYLTNIVQGDFGPSFKYKDYTVNELIASALPVSVKIGLAAFVFTVIMGVTVGTIAA 120
           +QY  YL  I+ GDFGPSFK +D++V+ELI +  P S+++GLAA +  + +GVT+GT+AA
Sbjct: 61  DQYALYLGGILHGDFGPSFKIRDFSVSELILAGAPASIQLGLAALILALSVGVTLGTLAA 120

Query: 121 LKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQDGGFEYMALPVLG 180
           L QN   D+ +M  AM+G+V+P+FV+AP+L  +  + + + P  GW DG   Y  LP+  
Sbjct: 121 LHQNEAGDFAVMGVAMVGIVIPNFVMAPLLSLVLGVYWGILPTSGWGDGALRYKILPIFA 180

Query: 181 MSLLYVATFARITRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALLPVVSYMGPAF 240
           ++L  +A  AR+TRGSM+E L SNF+RTARAKGL    +V++H LK  LLPVVSY+GPA 
Sbjct: 181 LALPQIAYIARLTRGSMVEVLRSNFVRTARAKGLGERLVVMRHTLKAGLLPVVSYLGPAA 240

Query: 241 VGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDILLAYI 300
             + TGSVV+ETIF +PGIG  FVNAA NRDY +VMGV I+   L IL N  VD+L   I
Sbjct: 241 AAVTTGSVVVETIFAVPGIGTYFVNAALNRDYPVVMGVVIVYASLIILLNLAVDLLYGLI 300

Query: 301 DPKIR 305
           DPK+R
Sbjct: 301 DPKLR 305